PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009799707.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 405aa    MW: 47259.8 Da    PI: 6.2971
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009799707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.63.4e-2380175186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                     +Wt+q+v++Li+a+++++e+  ++           kk++W++vsk+m+er   +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d l
  XP_009799707.1  80 KWTDQMVRLLITAVSYIGEETAAEYggrrkcsnlHKKGKWKSVSKVMAERDHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPALLDVL 174
                     7**************999988864223344567799********************************************669999999998887 PP

        trihelix  86 e 86 
                     +
  XP_009799707.1 175 D 175
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.3E-2278201No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MRANHQQLQH YQSHSKQGAI NANFPLTIGS MQQDCNQNIS LADQGKSASD EDEPSFTEDA  60
ADGLNDLNRG KKATPWQRVK WTDQMVRLLI TAVSYIGEET AAEYGGRRKC SNLHKKGKWK  120
SVSKVMAERD HFVSPQQCED KFNDLNKRYK RLNEILGRGT SCEVVENPAL LDVLDHVSEK  180
GKEEVRKILS SKHLHYEEMC SYHNGNRLHL PPDLELQRSL RLALTSRDEH DDNDVRKHLQ  240
DDNDDDDHET HLVEDQDEYE ENHSLPREHR LHGMSGGFSK RIKQCQGHEI VTFGNFLTTV  300
DGNRTFISQP QKANTDANQM FSECNKADIL QKQWMDHRSF QLEEQKLQIQ AQMLELEKER  360
FNWKRFSRKK DIELEMMRME NERIKLENEC MALELKRKEM LAENV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799707.10.0PREDICTED: uncharacterized protein LOC104245746 isoform X2
TrEMBLA0A1U7Y6E70.0A0A1U7Y6E7_NICSY; uncharacterized protein LOC104245746 isoform X2
STRINGXP_009799706.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-144sequence-specific DNA binding transcription factors