PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009799718.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 233aa MW: 27369.1 Da PI: 9.3589

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009799718.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.1	3.5e-24	36	124	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++YneYA++vGFsvrk++ +++k+ g +t+r+ +C keg+r+++k+k ++ ++ r etrtg +a++ v++++ gk+++tk++leHnH+l+ XP_009799718.1 36 NYYNEYARRVGFSVRKEYINTNKELGYVTSRKITCFKEGFRRDDKRK-DQVKKLRRETRTGYQAHIIVTRHSMGKYHITKVKLEHNHALV 124 69****************************************999.999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-21	36	124	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MCENSPEEVL QSNSQGTVDY EPKLGLEFDS DKDALNYYNE YARRVGFSVR KEYINTNKEL 60 GYVTSRKITC FKEGFRRDDK RKDQVKKLRR ETRTGYQAHI IVTRHSMGKY HITKVKLEHN 120 HALVSPTMIH MLPSHRRINE VQAHEIDLAE DVGLFSKTTF DFMSLQDGGR VNLGYTKLNQ 180 KNYLRTKRQK AMRRGEAGVL LEYFEKKRIE DPSLFFAVQL DVDDMITNIF WTD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	81	RRDDKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799718.1	1e-176	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U7Y9D2	1e-175	A0A1U7Y9D2_NICSY; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009799718.1	1e-175	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-35	FAR1-related sequence 5