PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009799887.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 196aa    MW: 22562.8 Da    PI: 9.861
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009799887.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer67.72e-211261457
     ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                     +Y eC++N Aas+ g+a+DGC+Ef+p+    g +++l Ca C CHR+FHR+ +
  XP_009799887.1 12 QKYYECKHNYAASTMGYALDGCREFCPN----GAPESLICAPCLCHRSFHRKME 61
                    68*************************9....889****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-171361IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-171359IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-91369IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152318.6851460IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.84E-7134190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-13134190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MASNSKHFLV KQKYYECKHN YAASTMGYAL DGCREFCPNG APESLICAPC LCHRSFHRKM  60
EVELPILSNT HHRHGTSLVI VVPPTPTSQQ RSRIHPHQKY DENNNVAATS PPQGAETTEM  120
GGGEIEVVEQ MSIKRKRINS EQKERVKAFA EKIGWRRWTK YNKEVKTFCA EIGITPYFLK  180
NWIDNNRRRF GPKKTI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799887.11e-148PREDICTED: zinc-finger homeodomain protein 5-like
RefseqXP_016452911.11e-148PREDICTED: zinc-finger homeodomain protein 5-like
TrEMBLA0A1S3YKY71e-147A0A1S3YKY7_TOBAC; zinc-finger homeodomain protein 5-like
TrEMBLA0A1U7Y6X91e-147A0A1U7Y6X9_NICSY; zinc-finger homeodomain protein 5-like
STRINGXP_009799887.11e-147(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108891118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.28e-25homeobox protein 31