PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009800251.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 258aa    MW: 29486.2 Da    PI: 7.5696
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009800251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-161463148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++  ++G+   +W t +++ g++R++k+c++rw++yl
   XP_009800251.1 14 RGQWSPEEDEILKNYLLKHGTTagNWITLPHRAGLKRCGKSCRLRWLNYL 63
                     89**********************************************97 PP
2Myb_DNA-binding52.89.5e-1770112246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eEd ++  + +qlG++ W+ Ia++++ gRt++++k++w++
   XP_009800251.1  70 GNFTQEEDNIICSLYTQLGSR-WSVIASKLP-GRTDNDVKNHWNT 112
                      79*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.79963IPR017930Myb domain
SuperFamilySSF466899.9E-2712110IPR009057Homeodomain-like
SMARTSM007172.2E-101365IPR001005SANT/Myb domain
PfamPF002492.3E-141463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-221570IPR009057Homeodomain-like
CDDcd001671.07E-71763No hitNo description
PROSITE profilePS5129422.67264118IPR017930Myb domain
SMARTSM007171.4E-1368116IPR001005SANT/Myb domain
PfamPF002491.7E-1370112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2471118IPR009057Homeodomain-like
CDDcd001675.61E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRTPCCDKT KVKRGQWSPE EDEILKNYLL KHGTTAGNWI TLPHRAGLKR CGKSCRLRWL  60
NYLRPDIKLG NFTQEEDNII CSLYTQLGSR WSVIASKLPG RTDNDVKNHW NTKLKKKLLA  120
TNANPTRNFD DSKQVFHSSS MVPKEEEEQA AYSPIQFPFP NWESAGVSSH ILNNNKSMVQ  180
HDQKQFPLPR LSQDYSKIST SREESMSFGS SSVAMHENVD LAWFNTFEGF PIDDEIMGAG  240
LWTHQSVLED IDFPVTFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24141187108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800251.10.0PREDICTED: transcription factor RAX1-like
TrEMBLA0A1U7YE680.0A0A1U7YE68_NICSY; transcription factor RAX1-like
STRINGXP_009800251.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.14e-57myb domain protein 87