PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009800265.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 244aa MW: 27855.1 Da PI: 6.6114

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009800265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.1	1.2e-35	9	65	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + lkcprC+s+ntkfCyynny+ sqPr+fCk+C+r+Wt+GG lrnvPvGggr++++ XP_009800265.1 9 PEPLKCPRCESANTKFCYYNNYNKSQPRHFCKGCKRHWTEGGVLRNVPVGGGRKNKR 65 6789***********************************************976654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-22	9	65	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-31	11	64	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.149	12	66	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	14	50	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MGQTSTTKPE PLKCPRCESA NTKFCYYNNY NKSQPRHFCK GCKRHWTEGG VLRNVPVGGG 60 RKNKRLKITR EKSNSQILVV EDEEKNVFDN LYHELNLPSS SLPHDTITNN LCCSNPSKIQ 120 SHSCQTLKKY ITFERSDTHS ATLLKSPDNI ASNIFTGAPQ DENMLLSLSF DKIPCSIHTS 180 TNQSSNIYNY MENLDSTMEE STITWQGPGT SSLMIENMQS YWNWNDIEAL DDLNRLWDDT 240 EIKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800265.1	0.0	PREDICTED: dof zinc finger protein DOF4.2-like
TrEMBL	A0A1U7YN40	0.0	A0A1U7YN40_NICSY; dof zinc finger protein DOF4.2-like
STRING	XP_009800265.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6171	20	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	3e-30	Dof family protein