PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009800270.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 297aa    MW: 33611.7 Da    PI: 4.4963
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009800270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-1897187187
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k+l +sdv++++r+v+pkk ae++    ++k  e++ +t+ d +g  +W+++++y  +++s++yvl+ ++ +Fv+ +gL++gD + ++++++
  XP_009800270.1  97 FDKQLQNSDVSSLRRIVVPKKAAERYlptlEIK--EGFPITMDDMDGiHVWSFRYRYwpNNSSRMYVLE-NTGDFVQTHGLRQGDYFALHYNDQ 187
                     89**************************65544..7788********9*********888899999999.******************998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-2495189IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-2095189IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-2295184No hitNo description
PROSITE profilePS508639.37597199IPR003340B3 DNA binding domain
PfamPF023626.7E-1697187IPR003340B3 DNA binding domain
SMARTSM010192.7E-1497199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAMTEAYGVM ADGNAALVAN TPTSMINGVF EATTPTDILN AQPPHQTTKR SRSQRRRRSS  60
INFASLLDFP SFLPHVPPPP PMPVARALEP TGFRFLFDKQ LQNSDVSSLR RIVVPKKAAE  120
RYLPTLEIKE GFPITMDDMD GIHVWSFRYR YWPNNSSRMY VLENTGDFVQ THGLRQGDYF  180
ALHYNDQKQI YGIEARKAGD GAVFHGYEAE DMILTDYAQA ADDGNGVLMN EPELDMSSFY  240
FPAMDNEMGM SFIYDTSFWN EPAFDFVGGP MTYYSTNVFP MPSFGSIEDS FSVDDFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-47942002108B3 domain-containing transcription factor FUS3
6j9b_D4e-47942002108B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-116HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800270.10.0PREDICTED: B3 domain-containing transcription factor FUS3
TrEMBLA0A1U7YN450.0A0A1U7YN45_NICSY; B3 domain-containing transcription factor FUS3
STRINGXP_009800270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.19e-55B3 family protein