PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009800537.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 365aa    MW: 39481.1 Da    PI: 8.2743
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009800537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.19e-36691732106
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaesss 79 
                     ++++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+++i+e+tgt                 ++s++      +  
  XP_009800537.1  69 TPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVKWLLEHAEQSIIEATGTgtvpaiavsvngtlkipTTSPP------T-- 155
                     6899************************************************************4444444444444333311111......1.. PP

             TCP  80 ssasnsssgkaaksaakskksqksaas 106
                              ++++++++s+k+++++++
  XP_009800537.1 156 ---------NRENDENNSQKRRRKSST 173
                     .........111111122222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-2974173IPR005333Transcription factor, TCP
PROSITE profilePS5136925.17475129IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSNFHDPDDE CGTSELSNGA GGDPNHREKD SDEFSDEKKV VLSALKQEPF DSDHHTFVPA  60
MPMPVATTTP RRSSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS DGETVKWLLE  120
HAEQSIIEAT GTGTVPAIAV SVNGTLKIPT TSPPTNREND ENNSQKRRRK SSTNSEFIDV  180
GSLNKNVANV SQFAPVTPPP VTLAAGVAPP HELIPVWAIN NGGVMIPSNS FWMIPATPPL  240
NVTNNNSSNN VMQYPQLWTI TPSVTPVFNL AAAARPISSF VAATAANING PPPMMEAGPL  300
STWPKVGSNK SSMAPASLSS STGDRNNNNN DVKAHKLRDF SLEIYDRKEL QFMGRSGNQV  360
TSSKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800537.10.0PREDICTED: transcription factor TCP9-like
TrEMBLA0A1U7Y8U30.0A0A1U7Y8U3_NICSY; transcription factor TCP9-like
STRINGXP_009800537.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137311112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.26e-56TCP family protein