PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009801280.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 178aa MW: 20663.9 Da PI: 8.4675

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009801280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.8e-14	11	60	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah +Er+RR+++ + ++ Lr++lP + ++K s ++ Le+A++YI++L+ XP_009801280.1 11 AHRDVERQRRQEMTNLYASLRSHLPLEF--LKGKRSASDHLEQAMNYIQHLE 60 8***********************65..9*****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.493	7	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-13	10	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-10	11	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.34E-9	11	63	No hit	No description
Pfam	PF00010	2.3E-11	11	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-5	13	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MDQNKLIKII AHRDVERQRR QEMTNLYASL RSHLPLEFLK GKRSASDHLE QAMNYIQHLE 60 NNINDLEKKR KKLKILAHYS TREDKETIHK YNLEEYVTVN PCQDGVEILI KKKFGEEGLP 120 LSKVVEELMK RKLNVVTCVS TKVDETSLHK IQVEVTDVSC MDVSTLQGKL AEMMLSLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	71	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801280.1	1e-128	PREDICTED: transcription factor bHLH118-like
Refseq	XP_016437313.1	1e-127	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A1S3XC32	1e-126	A0A1S3XC32_TOBAC; transcription factor bHLH118-like
TrEMBL	A0A1U7YR13	1e-127	A0A1U7YR13_NICSY; transcription factor bHLH118-like
STRING	XP_009801280.1	1e-128	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	1e-38	bHLH family protein