PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801335.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 243aa    MW: 27496.6 Da    PI: 5.3653
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.3e-2191151257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+ F + n +ps++++++++ +l    +++e++V++WFqNrRa+ k+
  XP_009801335.1  91 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKDITFELsqhgQISETNVYNWFQNRRARSKR 151
                     89*****************99**************************************97 PP
2Wus_type_Homeobox100.89.9e-3391153365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        r+RWtPtp Q++iLe+++++G  tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq
     XP_009801335.1  91 RQRWTPTPVQLQILERIFDQGNGTPSKQKIKDITFELSQHGQISETNVYNWFQNRRARSKRKQ 153
                        79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.57687152IPR001356Homeobox domain
SMARTSM003896.6E-1489156IPR001356Homeobox domain
SuperFamilySSF466892.31E-1889154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-1689154IPR009057Homeodomain-like
PfamPF000461.2E-1891151IPR001356Homeobox domain
CDDcd000861.88E-1391153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEWENQQQQP PQQTAEDMNG AAVGGGMFVK VMTDEQMEVL RKQIAVYAVI CEQLVDLHKS  60
MASQHDIAGT RLGNLYCDPL ITSAGHRISG RQRWTPTPVQ LQILERIFDQ GNGTPSKQKI  120
KDITFELSQH GQISETNVYN WFQNRRARSK RKQQGGGAMN NVESEVETEV ESPNEKKTKP  180
EDLQSSHMPT SRAEEGSSNP AGSFDQLSFY AMSNPRMGQL IEKMEEPTSY HPYLHTENYD  240
MTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801335.10.0PREDICTED: WUSCHEL-related homeobox 13-like
SwissprotO817883e-80WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A1U7YR740.0A0A1U7YR74_NICSY; WUSCHEL-related homeobox 13-like
STRINGXP_009801335.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56752437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-73WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]