PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801370.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 302aa    MW: 33980.2 Da    PI: 4.842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801370.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.11e-154291255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+e E+rRR +iN++f+ Lr l+P+     ++K + a+ L ++++YI+ Lq
  XP_009801370.1 42 RSKHSETEQRRRIKINERFQALRNLIPET----DQKRDRASFLLEVIQYIQFLQ 91
                    899*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-2239112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1839116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2474090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-134291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-154295No hitNo description
SMARTSM003533.3E-124696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVRTVKTHHE DDEEDDEEFS SRTPDGSSQK GKSNDGKGNS HRSKHSETEQ RRRIKINERF  60
QALRNLIPET DQKRDRASFL LEVIQYIQFL QEKLQWYEGA HQGWSAEPSK LMPWRSTSGP  120
VEGFVEQSQI IRNGSTHEDN IVINPTLLTS AQNSVEPNLS TAALYTDDPH MEANEAVAFN  180
MPLQCNLFEN ASIQPSRSSP DAEHCASQPQ SLYWPGKQDA IDSDVPSYGR NDQEEVKVDG  240
EEAGNSNVYS QRLLSTLNQT LASMGVDLSQ ANVKVQLDIA KCPSSGDNYD HARKRLRTES  300
SM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7179887e-50AJ717988.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT21-4-270, cultivar Bright Yellow 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801370.10.0PREDICTED: transcription factor BIM2-like
RefseqXP_009801371.10.0PREDICTED: transcription factor BIM2-like
RefseqXP_016484240.10.0PREDICTED: transcription factor BIM2-like
TrEMBLA0A1S4B5L50.0A0A1S4B5L5_TOBAC; transcription factor BIM2-like
TrEMBLA0A1U7YHF00.0A0A1U7YHF0_NICSY; transcription factor BIM2-like
STRINGXP_009801370.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89471821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-46BES1-interacting Myc-like protein 2