PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009801509.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 153aa MW: 18529.9 Da PI: 10.1552

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009801509.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.5	2.6e-16	65	109	5	49
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ +r+v + R ++++ KAeELSvLC++e+ +++fs+++k ey XP_009801509.1 65 DECRRSVVLQERMETLFRKAEELSVLCGVEIGIVVFSPDQKNVEY 109 5789***********************************997666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-8	53	113	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.942	53	113	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-7	55	75	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.27E-17	56	147	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-14	65	109	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-7	75	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-7	90	111	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MFRHIQPNYY LNKRVNTPFA NYIYLFICYH GSMYTLFHTF EHSQLQKKVH FVSSLKKIKI 60 AMLVDECRRS VVLQERMETL FRKAEELSVL CGVEIGIVVF SPDQKNVEYE WPPRDKFKQL 120 LMRFLDKPLV ERLKKLTTNE MFLRKEMEKT KKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801509.1	1e-110	PREDICTED: agamous-like MADS-box protein AGL36
TrEMBL	A0A1U7YQL1	1e-109	A0A1U7YQL1_NICSY; agamous-like MADS-box protein AGL36
STRING	XP_009801509.1	1e-110	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26650.1	9e-15	AGAMOUS-like 36