PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801639.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 64aa    MW: 7421.36 Da    PI: 6.2366
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801639.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-08547545
                     -HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     Tt   +++ +a +++ ++   +W+ Ia ++g g+++++++ ++ 
   XP_009801639.1  5 TTRQNKKFEEALALFDKEtpdRWHNIAMCVG-GKSAEEVRRHYE 47
                     5667799*********99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-10558IPR009057Homeodomain-like
SMARTSM007170.006552IPR001005SANT/Myb domain
PfamPF002491.7E-51047IPR001005SANT/Myb domain
CDDcd001671.15E-51050No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MGSSTTRQNK KFEEALALFD KETPDRWHNI AMCVGGKSAE EVRRHYELLV KDIMQIENGQ  60
ENCH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-195601267RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801639.19e-43PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN07e-24RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A1U7YQY42e-41A0A1U7YQY4_NICSY; protein RADIALIS-like 3
STRINGXP_009801639.13e-42(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-25RAD-like 6