PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801878.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21125.1 Da    PI: 10.0852
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.11.5e-201661247
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    +ien+ nrqvtfskRrng++KKA+EL v+++aev +i+f +  k y
  XP_009801878.1 16 KIENQNNRQVTFSKRRNGVFKKANELAVMTGAEVGIIVFPPGSKPY 61
                    79************************************98776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.731767IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-27766IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-25877IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-18929IPR002100Transcription factor, MADS-box
PfamPF003193.1E-231663IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSTRLIKGRK SVRLAKIENQ NNRQVTFSKR RNGVFKKANE LAVMTGAEVG IIVFPPGSKP  60
YSFGHPNVDE TIDKYVGEER PPSPSSPGID DKYVQMFRKA NSMTLNTQLN TLQDQLEFAI  120
NLKSKLKEKN KNLESQQEWF KGPIEKMNYT EASMLKEGLE DLLLKVKNYG TERGYGYENG  180
KWKAE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801878.11e-135PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U7YFG21e-133A0A1U7YFG2_NICSY; agamous-like MADS-box protein AGL62
STRINGXP_009801878.11e-134(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-26AGAMOUS-like 61