PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801911.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 285aa    MW: 32596.2 Da    PI: 8.0868
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.7e-14861581799
                     E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +p+ f+ ++ +g   e+++  +  + +++W+vk+  ++++    l++GW++F+++++L+ gD +vF+++g++ef   v++f++
  XP_009801911.1  86 KIPRGFL-KYlKGH--EDIEHAVLRRVSKQWQVKV--NGRR----LEDGWEKFAEEHDLQLGDLLVFRHEGNMEF--EVSIFDS 158
                     5999999.554655..6778999999*********..8888....*************************99999..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-181838IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.7E-1377159IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-1886161IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1786161IPR015300DNA-binding pseudobarrel domain
PfamPF023627.7E-1186158IPR003340B3 DNA binding domain
PROSITE profilePS5086311.98487159IPR003340B3 DNA binding domain
CDDcd100171.58E-1387157No hitNo description
SuperFamilySSF1019363.73E-6213271IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-7214271IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSNTTKRKKK NIFSTAMKIP PKKPHFFKPI LPGFKHGLTR GVALMVSTLH FQPKGCEFES  60
PQEQGEGLLG GKYAEGLSKT ASLPRKIPRG FLKYLKGHED IEHAVLRRVS KQWQVKVNGR  120
RLEDGWEKFA EEHDLQLGDL LVFRHEGNME FEVSIFDSSH CDREYSEYLQ QEEEEEEANN  180
VEETSKNLEF EERPSPSIEL SDHAEAATHK PFGHSSFVCT IKPYCLTYGF LYVPKHFASA  240
NGFKTNKKCS LIIKDERQNS WTLRLSCCKK STLEMAVVNS LLIIA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0665913e-43AB066591.1 Nicotiana tabacum NtGA2 gene for heterotrimeric GTP binding protein alpha subunit, complete cds.
GenBankAB0665943e-43AB066594.1 Nicotiana tomentosiformis NtGA2t gene for heterotrimeric GTP binding protein alpha subunit, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801911.10.0PREDICTED: B3 domain-containing protein REM10-like isoform X2
TrEMBLA0A1U7YIZ60.0A0A1U7YIZ6_NICSY; B3 domain-containing protein REM10-like isoform X2
STRINGXP_009801904.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-20B3 family protein