PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801917.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 238aa    MW: 27607.5 Da    PI: 8.1514
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.2e-1632111999
                     HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +k+g l +p+ f+ ++ +g   e+++  +  + +++W+vk+  ++++    l++GW++F+++++L+ gD +vF+++g++ef   v++f++
  XP_009801917.1  32 PGFKHG-LKIPRGFL-KYlKGH--EDIEHAVLRRVSKQWQVKV--NGRR----LEDGWEKFAEEHDLQLGDLLVFRHEGNMEF--EVSIFDS 111
                     556666.********.664666..6788999999*********..8888....*************************99999..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-2218114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-2219114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.49223112IPR003340B3 DNA binding domain
CDDcd100175.13E-1724110No hitNo description
SMARTSM010191.1E-1826112IPR003340B3 DNA binding domain
PfamPF023622.7E-1234111IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-6166224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-7167224IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSNTTKRKKK NIFSTAMKIP PKKPHFFKPI LPGFKHGLKI PRGFLKYLKG HEDIEHAVLR  60
RVSKQWQVKV NGRRLEDGWE KFAEEHDLQL GDLLVFRHEG NMEFEVSIFD SSHCDREYSE  120
YLQQEEEEEE ANNVEETSKN LEFEERPSPS IELSDHAEAA THKPFGHSSF VCTIKPYCLT  180
YGFLYVPKHF ASANGFKTNK KCSLIIKDER QNSWTLRLSC CKKSTLEMAV VNSLLIIA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801917.11e-179PREDICTED: B3 domain-containing protein REM10-like isoform X3
TrEMBLA0A1U7YCS51e-177A0A1U7YCS5_NICSY; B3 domain-containing protein REM10-like isoform X3
STRINGXP_009801904.11e-158(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-24B3 family protein