PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801950.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 267aa    MW: 30726.4 Da    PI: 8.3927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801950.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.2e-1418951199
                    HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    +k++ l +p  f+ ++ +g    +++  +  ++g++W vk+  ++++    +++GW eF+++++L+ gD++vF+++g++ef   v +f++
  XP_009801950.1 18 FKHD-LKIPIGFL-KYlKGC--DHIEHAILKRDGKKWLVKV--NGRR----FGDGWAEFAEEHDLQLGDMLVFRHEGNMEF--EVIIFDS 95
                    5565.99*****9.664444..4567888999*********..8887....9************************99999..7777775 PP
2B352.58.7e-17141228495
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      +++++ l++g l++pk+fa ++g+ + ++  ++++de+ rsW++kl  + +++++++++ W+eF  an++k+g  ++F+++  +++++v k
  XP_009801950.1 141 CTVKPYCLTNGFLRIPKEFALANGLTN-KKCNVIIRDERQRSWNLKL--TTYGSQVYMGGRWSEFRAANDIKVGNHIMFEVVT-NGEQPVWK 228
                     5678999****************8875.4459***************..9***9**************************876.44445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-20398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-21398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.252796IPR003340B3 DNA binding domain
CDDcd100171.29E-15894No hitNo description
SMARTSM010199.2E-151096IPR003340B3 DNA binding domain
PfamPF023621.2E-111994IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-18135230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-18136229IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.801138232IPR003340B3 DNA binding domain
SMARTSM010194.2E-18138233IPR003340B3 DNA binding domain
PfamPF023623.9E-14140227IPR003340B3 DNA binding domain
CDDcd100172.72E-12144217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MKIPPKKPHF LKPILPGFKH DLKIPIGFLK YLKGCDHIEH AILKRDGKKW LVKVNGRRFG  60
DGWAEFAEEH DLQLGDMLVF RHEGNMEFEV IIFDSSQCDR EYAEYVQQEE GEVHTVEETS  120
KNFEFKDAAI HNSVGQSYFI CTVKPYCLTN GFLRIPKEFA LANGLTNKKC NVIIRDERQR  180
SWNLKLTTYG SQVYMGGRWS EFRAANDIKV GNHIMFEVVT NGEQPVWKFH GKPNPNIKSS  240
SKALTHFVCT IRPYCLSNDL LVSLCLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801950.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A1U7YT130.0A0A1U7YT13_NICSY; B3 domain-containing protein REM5-like
STRINGXP_009801950.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-41B3 family protein