PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801951.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 133aa    MW: 14869.8 Da    PI: 8.4826
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801951.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-16491211488
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                     ++ ++p +fa ++g+ + ++  l+++de+ rsW+++l  + ++++++l++ W+eF  an+Lk+gD ++Fk++ + +
  XP_009801951.1  49 CQTRIPTQFALANGLTN-KNCGLIIRDEKQRSWNLRL--TTYGSQVYLGGRWREFHAANDLKVGDHMIFKVVTDgE 121
                     7789*********7664.44579**************..*******************************764422 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-1637122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-1540121IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.5E-640126IPR003340B3 DNA binding domain
PfamPF023622.5E-1349121IPR003340B3 DNA binding domain
CDDcd100179.23E-1552129No hitNo description
PROSITE profilePS5086311.15253133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDLLIINNIT DKAKPCILSS SQDFPNAEAA SHSPFSQSQF VYTAKPYACQ TRIPTQFALA  60
NGLTNKNCGL IIRDEKQRSW NLRLTTYGSQ VYLGGRWREF HAANDLKVGD HMIFKVVTDG  120
ENQSGNFVVN SLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801951.11e-97PREDICTED: uncharacterized protein LOC104247595
TrEMBLA0A1U7YJ283e-96A0A1U7YJ28_NICSY; uncharacterized protein LOC104247595
STRINGXP_009801951.16e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-10B3 family protein