PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801965.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 237aa    MW: 27608.6 Da    PI: 9.2827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801965.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-111663655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    + +E++RR+++++ +++L +llP+ a   +++ l+  + L  A++YIksL+
  XP_009801965.1 16 KYVEKNRRNNMKNLYNQLYSLLPNhA---SKETLTLPDQLDTATNYIKSLE 63
                    568*********************55...7777****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.4461062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-121380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-101580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00441668IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-71763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MESGLRSNSA PKLERKYVEK NRRNNMKNLY NQLYSLLPNH ASKETLTLPD QLDTATNYIK  60
SLETKLKKKK KYMEELRISR KRPQSFNATN SEPSSSTKSL IPHIEFHEMS PTMFVVLITG  120
LDNLATFYNV IQLLHEEGVE VVYSNFSLNG NSMLQISLET KMDKNSTMEF RATTLFDKLK  180
ELLYGSSRKN YMESHLHLWE YIFESELLGF DALELLPIAS QNPTLQYNYM QKNLRNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16682KKKKKYMEELRISRKRP
26981KKYMEELRISRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801965.11e-173PREDICTED: transcription factor bHLH120-like
TrEMBLA0A1U7YT301e-171A0A1U7YT30_NICSY; transcription factor bHLH120-like
STRINGXP_009801965.11e-172(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52971427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-20bHLH family protein