PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802511.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 204aa    MW: 23183.9 Da    PI: 4.2238
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802511.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.8e-1453140197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+ ++++++k++   +p +f+ e+g +      ++le ++g  W+vkl   ++sg+ ++++GW++F +   +  g f++F+++g+s+f   v 
  XP_009802511.1  53 FFKIILSPHASKLH---IPDEFMMEYGDN--LRDVVSLEVPNGAIWKVKL--HNCSGMAWFKEGWNKFKEYYSIGCGYFLLFRYTGNSRF--SVF 138
                     78888788887766...*********987..5558***************..**********************************9999..555 PP

                     EE CS
              B3  96 vf 97 
                     +f
  XP_009802511.1 139 IF 140
                     55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2147143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-2249150IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.1850143IPR003340B3 DNA binding domain
CDDcd100179.02E-1851141No hitNo description
PfamPF023622.8E-1153139IPR003340B3 DNA binding domain
SMARTSM010194.6E-1253143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSPDEEIDFS HCSLNKQNFD ATLSHEEQTA ETVESRLPEE PKPVDSPEKP PQFFKIILSP  60
HASKLHIPDE FMMEYGDNLR DVVSLEVPNG AIWKVKLHNC SGMAWFKEGW NKFKEYYSIG  120
CGYFLLFRYT GNSRFSVFIF DLSASEIDYP PGPNEDEISP GQNEDLTPEN LCVVAEPEEN  180
PLTCQENSCA ETLLMISHPS RSNV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802511.11e-151PREDICTED: B3 domain-containing protein At1g49475-like
RefseqXP_016511083.11e-151PREDICTED: B3 domain-containing protein At1g49475-like
TrEMBLA0A1S4DCL61e-150A0A1S4DCL6_TOBAC; B3 domain-containing protein At1g49475-like
TrEMBLA0A1U7YKK51e-150A0A1U7YKK5_NICSY; B3 domain-containing protein At1g49475-like
STRINGXP_009802511.11e-150(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-27B3 family protein