PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009802654.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 165aa MW: 18829.7 Da PI: 9.7151

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009802654.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.1	1.5e-10	18	55	4	41
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 ++k+ ++ +s+ +n + K A LS+LC++++a+iifs XP_009802654.1 18 KDKRAEKIALSNKQNALSKRAMDLSTLCGIDIAIIIFS 55 7889999******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0033	1	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.344	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-14	9	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-6	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.7E-9	18	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-6	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-6	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MARMTSQMKS KSEKKILKDK RAEKIALSNK QNALSKRAMD LSTLCGIDIA IIIFSIAAEP 60 FFFGNPNVES VVERFSQAKQ PFYRMSSRKT THEKTGGGEE NDTMKKEKRK AINEEEKGES 120 TLEIFEPTTL VRLEKLKQEI DQLEKDLAEK IDELQSKIGV KDPKF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802654.1	1e-116	PREDICTED: agamous-like MADS-box protein AGL61, partial
TrEMBL	A0A1U7YTW9	1e-115	A0A1U7YTW9_NICSY; agamous-like MADS-box protein AGL61
STRING	XP_009802654.1	1e-116	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58