PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009802876.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 260aa MW: 29279.9 Da PI: 6.0829

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009802876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.8	2.7e-26	91	177	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA+++GF +r+++ ++s rnge ++r++vC+keg++++++++ + +r+ r gCka++ vkke++gkw+v+kl++eH+H+l+ XP_009802876.1 91 YYSTYATHLGFVMRVDAFRRSMRNGELVWRRLVCNKEGFSKSRQNQ--NGKRKCRAIREGCKAMIIVKKEQSGKWVVAKLVKEHSHPLV 177 8***************************************9988..888888899****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-24	91	177	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MDENNNATDD AEMVESSSGK ELTTNGVEAE GRLNMEHYVV NENNTTADDG EMVESSSGKE 60 LTRNGVEAEG RPNLEPYVGM EFESEEAAKA YYSTYATHLG FVMRVDAFRR SMRNGELVWR 120 RLVCNKEGFS KSRQNQNGKR KCRAIREGCK AMIIVKKEQS GKWVVAKLVK EHSHPLVVKP 180 ANTRIGSILC QTPDDKDVKI RELTAELQKE RKRSAVLQEQ LDMVLKDMED HSDQLSKNIN 240 DIVKSVNELE SRKIVSPNGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-139	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-139	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802876.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_016509498.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S4D830	0.0	A0A1S4D830_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U7YLL2	0.0	A0A1U7YLL2_NICSY; protein FAR1-RELATED SEQUENCE 5 isoform X1
STRING	XP_009802876.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12791	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-83	FAR1 family protein