PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009803068.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CAMTA

Protein Properties

Length: 1015aa MW: 113523 Da PI: 6.6784

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009803068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	171.7	1.1e-53	70	184	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e + rwl++ e++ iL+n+e +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqr XP_009803068.1 70 REgRFRWLRPAEVLFILQNHEDQQLANQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAETLNCYYAHGEKNPNFQR 164 56689**************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhyle 116 r+yw+L+ ++e+ivlvhy++ XP_009803068.1 165 RSYWMLDPAYEHIVLVHYRD 184 ****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.864	65	191	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.0E-74	68	186	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-47	73	184	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	3.4E-9	455	540	IPR013783	Immunoglobulin-like fold
CDD	cd00102	1.34E-6	456	540	No hit	No description
SuperFamily	SSF81296	1.02E-18	458	540	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.1E-8	458	539	IPR002909	IPT domain
PROSITE profile	PS50297	14.265	655	747	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.0E-14	655	749	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.87E-15	659	749	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.70E-13	660	747	No hit	No description
Pfam	PF12796	6.2E-7	670	748	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.992	688	720	IPR002110	Ankyrin repeat
SMART	SM00015	64	805	827	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.876	806	835	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	6.64E-6	841	912	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	1.2	864	886	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.199	865	894	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0036	867	885	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0013	887	909	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.883	889	913	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.4E-5	890	909	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence Send to blast
MTELYNKQPT IAPVSSPNTK TVKYSRFQVG SGNRILNERG RERAILHHRE ILLLRISMAE 60 SGYNINNLVR EGRFRWLRPA EVLFILQNHE DQQLANQPPQ KPASGSMFLF NKRVLRYFRK 120 DGHSWRKKKD GRTVGEAHER LKVGNAETLN CYYAHGEKNP NFQRRSYWML DPAYEHIVLV 180 HYRDITEIAA FMSQSSPISS IFSLSPSLYS TQHPGFTVVG SESYQQYQNE SSPGSGEICS 240 GAGINSNGMN ISDITGRTEG VSSSPQVEIS QALRKLEEQL SLNETDPLYS EIENSDDVEN 300 FGHDNSSLVQ IQHKSNNLLL QPYSGESSES QDQLLNLDGD IWKEMLDHCR SFPAAESQDK 360 CFEKLDENGT LQTLSGMGPI EVTESDRWLK FGGKEALKSS LTNFKQVEDF KYPACARINT 420 YGSYSDQYTT IFDQDLIGTS FEDDMSLTIA QKQKFTFHDI SPDWGYSSEA TKVMIVGSFL 480 CNPSEYTWTC MFGDIEVPVQ IIKEGAIRCQ APPHLPGKVT LCVTTGNRVS CSEVREFEYR 540 VKFDDHGQNN LAEVGGACKS SEELLHLVRF VQMLLSDSSV QKGDGSGSSN DILENSKASE 600 DSWSQVIESL LFGTSTSMVT VDWLLQELLK DKLQQWLSSK LQVQNNQMGY SFSRKEQGII 660 HMVAVLGFEW ALQPILDAGV SVNFRDINGW TALHWAARFG REKMVASLVA SGAFAGAVTD 720 PSSQDPFGKT AASIASSCGH KGVAGYLSEV ALTSHLSSLT LEESELSKGA ADVEAERTIS 780 SISTTNAATH EDQLSLKDTL AAVRNAAQAA ARIQSAFRAH SFRKRRQREA ARAATTSGDE 840 YCVLSNDVLG LSAASKLAFR NMRDYNSAAL AIQKKYRGWK CRKGFLAFRQ KVVKIQAHVR 900 GYQVRKEYKV CWAVGILEKV VLRWRRRGVG LRGFRLEEEP IEESEDEDIL KLFRKQKVDA 960 AINEAVSRVL SMVDSPEARQ QYHRILEKYR QAKAELGVNS DTVSTAHGDI SNSDI

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence Send to blast

MTELYNKQPT IAPVSSPNTK TVKYSRFQVG SGNRILNERG RERAILHHRE ILLLRISMAE  60
SGYNINNLVR EGRFRWLRPA EVLFILQNHE DQQLANQPPQ KPASGSMFLF NKRVLRYFRK  120
DGHSWRKKKD GRTVGEAHER LKVGNAETLN CYYAHGEKNP NFQRRSYWML DPAYEHIVLV  180
HYRDITEIAA FMSQSSPISS IFSLSPSLYS TQHPGFTVVG SESYQQYQNE SSPGSGEICS  240
GAGINSNGMN ISDITGRTEG VSSSPQVEIS QALRKLEEQL SLNETDPLYS EIENSDDVEN  300
FGHDNSSLVQ IQHKSNNLLL QPYSGESSES QDQLLNLDGD IWKEMLDHCR SFPAAESQDK  360
CFEKLDENGT LQTLSGMGPI EVTESDRWLK FGGKEALKSS LTNFKQVEDF KYPACARINT  420
YGSYSDQYTT IFDQDLIGTS FEDDMSLTIA QKQKFTFHDI SPDWGYSSEA TKVMIVGSFL  480
CNPSEYTWTC MFGDIEVPVQ IIKEGAIRCQ APPHLPGKVT LCVTTGNRVS CSEVREFEYR  540
VKFDDHGQNN LAEVGGACKS SEELLHLVRF VQMLLSDSSV QKGDGSGSSN DILENSKASE  600
DSWSQVIESL LFGTSTSMVT VDWLLQELLK DKLQQWLSSK LQVQNNQMGY SFSRKEQGII  660
HMVAVLGFEW ALQPILDAGV SVNFRDINGW TALHWAARFG REKMVASLVA SGAFAGAVTD  720
PSSQDPFGKT AASIASSCGH KGVAGYLSEV ALTSHLSSLT LEESELSKGA ADVEAERTIS  780
SISTTNAATH EDQLSLKDTL AAVRNAAQAA ARIQSAFRAH SFRKRRQREA ARAATTSGDE  840
YCVLSNDVLG LSAASKLAFR NMRDYNSAAL AIQKKYRGWK CRKGFLAFRQ KVVKIQAHVR  900
GYQVRKEYKV CWAVGILEKV VLRWRRRGVG LRGFRLEEEP IEESEDEDIL KLFRKQKVDA  960
AINEAVSRVL SMVDSPEARQ QYHRILEKYR QAKAELGVNS DTVSTAHGDI SNSDI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566047	0.0	JN566047.1 Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803068.1	0.0	PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A1U7YIW7	0.0	A0A1U7YIW7_NICSY; calmodulin-binding transcription activator 4-like isoform X1
STRING	XP_009803068.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]