PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803069.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 966aa    MW: 108169 Da    PI: 6.7391
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803069.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1154.52.3e-48701743106
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e + rwl++ e++ iL+n+e  +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqr
  XP_009803069.1  70 REgRFRWLRPAEVLFILQNHEDQQLANQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAETLNCYYAHGEKNPNFQR 164
                     56689****************************************************************************************** PP

            CG-1  97 rcywlLeeel 106
                     r+yw+L+ e 
  XP_009803069.1 165 RSYWMLDPES 174
                     ******9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143765.51965195IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-6068179IPR005559CG-1 DNA-binding domain
PfamPF038598.7E-4273173IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.2E-9406491IPR013783Immunoglobulin-like fold
CDDcd001021.26E-6407491No hitNo description
PfamPF018331.0E-8409490IPR002909IPT domain
SuperFamilySSF812969.52E-19409491IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.209.5E-15606700IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.265606698IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-15610700IPR020683Ankyrin repeat-containing domain
CDDcd002041.59E-13611698No hitNo description
PfamPF127965.8E-7621699IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.992639671IPR002110Ankyrin repeat
SMARTSM0001564756778IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876757786IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.84E-6792863IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.2815837IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.199816845IPR000048IQ motif, EF-hand binding site
PfamPF006120.0034818836IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0013838860IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.883840864IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-5841860IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MTELYNKQPT IAPVSSPNTK TVKYSRFQVG SGNRILNERG RERAILHHRE ILLLRISMAE  60
SGYNINNLVR EGRFRWLRPA EVLFILQNHE DQQLANQPPQ KPASGSMFLF NKRVLRYFRK  120
DGHSWRKKKD GRTVGEAHER LKVGNAETLN CYYAHGEKNP NFQRRSYWML DPESYQQYQN  180
ESSPGSGEIC SGAGINSNGM NISDITGRTE GVSSSPQVEI SQALRKLEEQ LSLNETDPLY  240
SEIENSDDVE NFGHDNSSLV QIQHKSNNLL LQPYSGESSE SQDQLLNLDG DIWKEMLDHC  300
RSFPAAESQD KCFEKLDENG TLQTLSGMGP IEVTESDRWL KFGGKEALKS SLTNFKQVED  360
FKYPACARIN TYGSYSDQYT TIFDQDLIGT SFEDDMSLTI AQKQKFTFHD ISPDWGYSSE  420
ATKVMIVGSF LCNPSEYTWT CMFGDIEVPV QIIKEGAIRC QAPPHLPGKV TLCVTTGNRV  480
SCSEVREFEY RVKFDDHGQN NLAEVGGACK SSEELLHLVR FVQMLLSDSS VQKGDGSGSS  540
NDILENSKAS EDSWSQVIES LLFGTSTSMV TVDWLLQELL KDKLQQWLSS KLQVQNNQMG  600
YSFSRKEQGI IHMVAVLGFE WALQPILDAG VSVNFRDING WTALHWAARF GREKMVASLV  660
ASGAFAGAVT DPSSQDPFGK TAASIASSCG HKGVAGYLSE VALTSHLSSL TLEESELSKG  720
AADVEAERTI SSISTTNAAT HEDQLSLKDT LAAVRNAAQA AARIQSAFRA HSFRKRRQRE  780
AARAATTSGD EYCVLSNDVL GLSAASKLAF RNMRDYNSAA LAIQKKYRGW KCRKGFLAFR  840
QKVVKIQAHV RGYQVRKEYK VCWAVGILEK VVLRWRRRGV GLRGFRLEEE PIEESEDEDI  900
LKLFRKQKVD AAINEAVSRV LSMVDSPEAR QQYHRILEKY RQAKAELGVN SDTVSTAHGD  960
ISNSDI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660470.0JN566047.1 Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803069.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1U7YV460.0A0A1U7YV46_NICSY; calmodulin-binding transcription activator 4-like isoform X2
STRINGXP_009803068.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]