PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803081.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 530aa    MW: 59470.8 Da    PI: 7.9607
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.3e-19171261199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k l++s+v++  ++ lp +f+++h    ++++ ++le+e+g+++e+k+i +k++    l++GW++++ a++L egD++vF+l+  ++f  +v 
  XP_009803081.1 171 FMKLLVRSHVGSCFWMGLPVPFCKNHLP--RKDTPVILESETGEEFEIKYIAEKTG----LSAGWRKYCTAHKLVEGDVLVFQLVAPTRF--KVY 257
                     899********************99953..45567***************777777....***********************9987777..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     v+r+
  XP_009803081.1 258 VIRA 261
                     8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-20165262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-22165262IPR015300DNA-binding pseudobarrel domain
CDDcd100175.32E-25169260No hitNo description
PROSITE profilePS5086313.183171262IPR003340B3 DNA binding domain
SMARTSM010199.1E-22171262IPR003340B3 DNA binding domain
PfamPF023621.6E-16171261IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MKIKVVHRSE PPTQEHRISY PDTPKKEVFD EEPLGTQLPE PDPDPDPDPD PEPASSKDNN  60
LSVVDASNPI NSVTLSAQTL SSSLLGKRRR KPKEIIDQIS PIPFRRKRAI KKQPSASQSN  120
NAVGDAGGKS ISTKQERCTA DGSGTATQMK SPIIIRAEEF LSNIGNEYPS FMKLLVRSHV  180
GSCFWMGLPV PFCKNHLPRK DTPVILESET GEEFEIKYIA EKTGLSAGWR KYCTAHKLVE  240
GDVLVFQLVA PTRFKVYVIR ANDLKEVDGA LSLLNLDAPP KQSDAEGAPA HNLKKRQKKS  300
LPLTVVHRRR RKADLSKQLL ALEAQSGNDS DEVASEILEG SRSSGLAVNF RDIKNLEEFH  360
ILVNGVCIDS ELPEDIRRKY YELCCNKSAF LHDRLLQGLH CKLVAGVIFE VVNIADAIRA  420
CKLTTKRTEF DIWDKSLKSF ELLGMNVGFL RTRLRWLVSL AFDSEGASDT KRYWEAKNEW  480
SRAEDEIRNL ETKLVELKKT SEKYGADVEA LKSKAESYEL MFQGEVNAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293311KKRQKKSLPLTVVHRRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803081.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A1U7YM750.0A0A1U7YM75_NICSY; B3 domain-containing protein Os01g0234100-like
STRINGXP_009803081.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-36B3 family protein