PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009803301.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 227aa MW: 24681.6 Da PI: 7.4421

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009803301.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.6	5.1e-39	37	137	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdP+yG+v++i++lqqq+ +l+ael XP_009803301.1 37 PCGACKFLRRKCVRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPIYGCVAHIFTLQQQVVSLQAEL 131 7*********************9989*************************************************************** PP DUF260 95 allkee 100 a+++++ XP_009803301.1 132 AYVQAR 137 9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.744	36	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-37	37	135	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MNGGSCGGAD GQYNNNNNNN NNNNNNNNVV GAGGSGPCGA CKFLRRKCVR GCIFAPYFDS 60 DQGTAHFAAV HKVFGASNAS KLLLRIPAHK RLDAVVTLCY EALARVRDPI YGCVAHIFTL 120 QQQVVSLQAE LAYVQARLST LQHLPMRQGP EPQSPITPTA LQSSSDIFCT TSSISSSSNN 180 MEYPQFDITA GLSDSFDDQE LENFELHTLA REFVSRHLPG VRFRPSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-36	33	131	7	104	LOB family transfactor Ramosa2.1
5ly0_B	4e-36	33	131	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803301.1	1e-169	PREDICTED: LOB domain-containing protein 19-like
Swissprot	O81322	1e-64	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A1U7YMT4	1e-168	A0A1U7YMT4_NICSY; LOB domain-containing protein 19-like
STRING	XP_009803301.1	1e-169	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	1e-64	LOB domain-containing protein 31