PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009803421.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 319aa MW: 34263.8 Da PI: 7.9049

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009803421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.8	4.5e-39	36	166	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++ ++tieWLlqqa+p+i+++tgt++++a+++ ++s +ss+ + s++ XP_009803421.1 36 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSEGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksaplfih 130 899***************************************************************99987777777777444445555667777 PP TCP 89 ...................................k 89 + XP_009803421.1 131 ggattmlgfhhqlsstgygqdpdenymkkryredtS 166 777777776655556666554444444433333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.071	39	93	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	8.6E-38	39	189	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MEFREPTSKN QGGSTSRSDN QNDNNNNLVI STKVIKKPSK DRHTKVDGRG RRIRMPALCA 60 ARVFQLTKEL GHKSEGETIE WLLQQAEPSI IAATGTGTIP ANFSTLNVSL RSSGTTISAP 120 PSKSAPLFIH GGATTMLGFH HQLSSTGYGQ DPDENYMKKR YREDTSGATS PSSAAKPERT 180 GDQAHEPDQE SKPGSSHASS YIPAPAMWAV APAAGNVGNT FWMVPSTSST MQRIGGFELS 240 GGGRFNPVQL GSMFLQQPQP VQQLGLGVSE TNLGMLASMN AYNSRGTGID LGMNLEQHQH 300 HNQQQGSDSG DENHKDSQS

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209513	0.0	AC209513.1 Solanum lycopersicum chromosome 6 clone C06HBa0286N17, complete sequence.
GenBank	AC211087	0.0	AC211087.2 Solanum lycopersicum chromosome 6 clone C06SLm0132E21, complete sequence.
GenBank	GQ496331	0.0	GQ496331.1 Solanum lycopersicum TCP transcription factor 13 (TCP13) mRNA, complete cds.
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803421.1	0.0	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	3e-69	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1U7YN57	0.0	A0A1U7YN57_NICSY; transcription factor TCP8-like
STRING	XP_009803421.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	4e-56	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]