PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803686.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 368aa    MW: 39188.1 Da    PI: 8.164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803686.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.2e-11301346655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++I+ Lq
  XP_009803686.1 301 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 346
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.954295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14298360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.04E-11299350No hitNo description
Gene3DG3DSA:4.10.280.101.9E-13300359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-8301346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MYPSSTSSSS QNSMSHTTTA GGGSNGGGGL TRYGSAPGAF LTTAVESVIG ANNHDFNLHG  60
SHHQHLGPSR YYSPNMTSSN SLNSESTSKA KEQSSLQRSI GFNDLTIGGG GGSGGGGCGV  120
LPAANSTTPL VRHSSSPARF LNQLAAAAGD TGFSVSMGRG SYNSKGVADS SRGITRLNSQ  180
LSFTRQEVLS QIAEENEDVE GTSTENGHRK STHSYATASS FAMGSWEDNN SIMFSVTPSK  240
RAKHISNDIV NGLDDGETQF QFGLSQTALE MSSMDRLLHI PEDSVPCKIR AKRGCATHPR  300
SIAERERRTR ISGKLKKLQD LVPNMDKQTS YADMLDLAVQ HIRTLQDQVQ NLNIELENCK  360
CGCKKSSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1235190.0EU123519.1 Nicotiana tabacum MYC mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803686.10.0PREDICTED: transcription factor bHLH128-like isoform X1
SwissprotQ8H1021e-76BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1U7YNX00.0A0A1U7YNX0_NICSY; transcription factor bHLH128-like isoform X1
STRINGXP_009803686.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]