PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009803689.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 172aa MW: 19365 Da PI: 7.3361

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009803689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.6	1.1e-34	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaC + + C ++C+lapyfpa+qpk+f+nv +lFG+s++l++l++l+ +e++ am+s++yeA+ar++ PvyG+v+ i++l +++ ++el+ XP_009803689.1 10 ACAACNYGMKPCDPHCPLAPYFPADQPKTFQNVYRLFGVSKILQMLHQLDATEKKPAMQSIIYEANARQKHPVYGCVAEIRNLYFNIRLCEQELQ 104 7********************************************************************************************** PP DUF260 96 llkeel 101 +++e+l XP_009803689.1 105 KVREQL 110 *99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.47	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-32	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MDLTNVTNQA CAACNYGMKP CDPHCPLAPY FPADQPKTFQ NVYRLFGVSK ILQMLHQLDA 60 TEKKPAMQSI IYEANARQKH PVYGCVAEIR NLYFNIRLCE QELQKVREQL SLYTKQLENS 120 SSTPGDSVSQ IRSENIIPPS TCGNTLSLFT QDTHGRLQES ALRGTAQFVE YG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-22	11	114	12	115	LOB family transfactor Ramosa2.1
5ly0_B	1e-22	11	114	12	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803689.1	1e-128	PREDICTED: LOB domain-containing protein 27-like isoform X1
Swissprot	Q9STS6	1e-33	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A1U7YWY7	1e-126	A0A1U7YWY7_NICSY; LOB domain-containing protein 27-like isoform X1
STRING	XP_009803689.1	1e-127	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	6e-36	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]