PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803955.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 202aa    MW: 22822.3 Da    PI: 8.6308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803955.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.21.9e-0557971355
                    HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    R+++ + ++ L++l+P+ +   +  K +   i+ + ++YIk L+
  XP_009803955.1 57 RRKMAEMYSVLQSLVPTlS---HVHKETRQNIVAESTDYIKRLE 97
                    89***************44...9999***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.0134496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-854122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-855105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-557100No hitNo description
PROSITE profilePS516719.859137202IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGIMEGYKDT CITPLTDFST TNEMVGCSSL NYGRSQRKEG PINENESMNI QKGREGRRKM  60
AEMYSVLQSL VPTLSHVHKE TRQNIVAEST DYIKRLEQEI VRLENLKKSF LVDKPALSQC  120
RNRVSSVNVT VLKGLAFFGI QFQLSQGLMT KIFCVLDKHQ AEVLAANISV SDHRIATLTI  180
TVMIGHNKSD IVENIQRELF LV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803955.11e-149PREDICTED: uncharacterized protein LOC104249264
TrEMBLA0A1U7YZ101e-148A0A1U7YZ10_NICSY; uncharacterized protein LOC104249264
STRINGXP_009803955.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132481415