PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009804011.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 198aa MW: 22572.8 Da PI: 4.6605

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009804011.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.7	4.7e-36	8	129	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF+Ptdeelvv++L++k++ +++ +vi+++++y ++PwdL+ k+ ae ++wyf+s++ + ++r+t +gyW+ g d++++s+ XP_009804011.1 8 LPPGFRFSPTDEELVVHFLQRKASLLPCHP-DVIPDLHLYPYDPWDLDGKAMAEGNKWYFYSRATN-------ETRITGNGYWQPVGVDESIMSS 94 79***********************999.99**********977778899*99765.......5799************99 PP NAM 96 .kgelvglkktLvfykg.rapkgektdWvmheyrl 128 +++++g+kk +fy g + p+g+kt+W+m+eyrl XP_009804011.1 95 sNHKVIGTKKYYAFYMGdEPPQGHKTNWLMQEYRL 129 77888******996789**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.5E-46	5	163	IPR003441	NAC domain
PROSITE profile	PS51005	44.515	8	164	IPR003441	NAC domain
Pfam	PF02365	2.0E-21	9	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MGDNNVNLPP GFRFSPTDEE LVVHFLQRKA SLLPCHPDVI PDLHLYPYDP WDLDGKAMAE 60 GNKWYFYSRA TNETRITGNG YWQPVGVDES IMSSSNHKVI GTKKYYAFYM GDEPPQGHKT 120 NWLMQEYRLS HSSASATRSS SRTSTTHSTN GYYSKWVICR VYESNSDNDE NDSAELSCLD 180 EVFLSLDDLD DDNISLPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-34	4	166	13	167	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-34	4	166	13	167	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-34	4	166	13	167	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-34	4	166	13	167	NO APICAL MERISTEM PROTEIN
3swm_A	4e-34	4	166	16	170	NAC domain-containing protein 19
3swm_B	4e-34	4	166	16	170	NAC domain-containing protein 19
3swm_C	4e-34	4	166	16	170	NAC domain-containing protein 19
3swm_D	4e-34	4	166	16	170	NAC domain-containing protein 19
3swp_A	4e-34	4	166	16	170	NAC domain-containing protein 19
3swp_B	4e-34	4	166	16	170	NAC domain-containing protein 19
3swp_C	4e-34	4	166	16	170	NAC domain-containing protein 19
3swp_D	4e-34	4	166	16	170	NAC domain-containing protein 19
4dul_A	4e-34	4	166	13	167	NAC domain-containing protein 19
4dul_B	4e-34	4	166	13	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804011.1	1e-148	PREDICTED: NAC transcription factor 25-like
Refseq	XP_016455676.1	1e-148	PREDICTED: NAC domain-containing protein 104-like
Swissprot	Q8GWK6	2e-76	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A1S3YTU6	1e-147	A0A1S3YTU6_TOBAC; NAC domain-containing protein 104-like
TrEMBL	A0A1U7YPW0	1e-147	A0A1U7YPW0_NICSY; NAC transcription factor 25-like
STRING	XP_009804011.1	1e-148	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-67	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]