PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804349.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 204aa    MW: 23087.8 Da    PI: 9.3963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.2e-17123173255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp+      r++lg++ t  +Aa+a++ a+ k++g
  XP_009804349.1 123 HYRGVRRRP-WGKYAAEIRDPTRK--GSRVWLGTYETDVDAARAYDCAAFKMRG 173
                     8********.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-31122181IPR001471AP2/ERF domain
CDDcd000184.02E-30122181No hitNo description
PfamPF008471.1E-12123173IPR001471AP2/ERF domain
PROSITE profilePS5103224.447123181IPR001471AP2/ERF domain
SMARTSM003802.7E-36123187IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23123182IPR016177DNA-binding domain
PRINTSPR003675.4E-13124135IPR001471AP2/ERF domain
PRINTSPR003675.4E-13163183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTRTEDEELT LELISQHLLG DFTSTESFVN SLSLHHDFSF STLPDDSQPV ILTSDQKPNH  60
FNLDNNFSEF ETKPNIIRCP TSVTTSVVSN TRIFDDSSLN RTDKKVDGSD YGSSVVENGK  120
KKHYRGVRRR PWGKYAAEIR DPTRKGSRVW LGTYETDVDA ARAYDCAAFK MRGRKAILNF  180
PFDAGNLSPP ANIGRKRTKR IGHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-28122182161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-28120182264ATERF1
3gcc_A2e-28120182264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755159e-61HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804349.11e-151PREDICTED: ethylene-responsive transcription factor ERF106
RefseqXP_016491251.11e-151PREDICTED: ethylene-responsive transcription factor ERF106-like
TrEMBLA0A1S4BQV71e-150A0A1S4BQV7_TOBAC; ethylene-responsive transcription factor ERF106-like
TrEMBLA0A1U7YYY11e-150A0A1U7YYY1_NICSY; ethylene-responsive transcription factor ERF106
STRINGXP_009804349.11e-151(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-43ERF family protein