PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804350.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 253aa    MW: 28695.6 Da    PI: 5.0513
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.8e-14112156255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+t      a+++a+ kl+g
  XP_009804350.1 112 HYRGVRQRP-WGKFAAEIRDP---NrKETRVWLGTFDT------AYDRAAFKLRG 156
                     7********.**********9...6466**********......88888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-17112166IPR016177DNA-binding domain
PfamPF008472.2E-8112150IPR001471AP2/ERF domain
PROSITE profilePS5103218.413112164IPR001471AP2/ERF domain
CDDcd000182.15E-26112164No hitNo description
SMARTSM003808.5E-29112170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-25112165IPR001471AP2/ERF domain
PRINTSPR003672.0E-13113124IPR001471AP2/ERF domain
PRINTSPR003672.0E-13146166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MASAQENCTL DLIRXHLLDD VAFMEYYCSE TESTTLYPQS SSSYEYLDQS FSFEPTLDYG  60
NTSQSCSLEI SSFFDNSETE LGTKPNVSAA RISSISQKQS FKERKPSLNI XHYRGVRQRP  120
WGKFAAEIRD PNRKETRVWL GTFDTAYDRA AFKLRGSKAI VNFPLEVANI KQQDDEIQSL  180
GNSSRKRVRG TEKEEQLVIN KEMKIEEERV PTAPLTPSSW SAIWDSGDGK GIFEVPLLSP  240
LSPHMAYSQL VII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-26112167263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7471034e-97AB747103.1 Nicotiana umbratica NuERF4 mRNA for ethylene response factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804350.10.0PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor 5
SwissprotQ9LW481e-125ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A1U7Z0930.0A0A1U7Z093_NICSY; LOW QUALITY PROTEIN: ethylene-responsive transcription factor 5
STRINGXP_009804350.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-52ERF family protein