PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804589.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 356aa    MW: 38797.8 Da    PI: 8.6072
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.84.8e-39651832105
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                      +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+ +  + s +ss++ s+++       
  XP_009804589.1  65 QPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANYSsLNISLRSSGNISRHNyltqnls 159
                     689****************************************************************9977766666666666333335555555 PP

             TCP  89 ......kaaksaa.kskksqksaa 105
                           ++++s++  + +++ + +
  XP_009804589.1 160 hgvglfSSENSSMgLNIFPSGNVN 183
                     566666333333334444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-3769167IPR005333Transcription factor, TCP
PROSITE profilePS5136926.58371125IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MIMETGHDNY GNSTQRPYFP LQLLEKREDP ICSTSVYRHP SSLHISNTDT SADQKSNKEP  60
NKKPQPKRTS TKDRHTKVDG RGRRIRMPAT CAARVFQLTK ELGHKSDGET IEWLLQQAEP  120
SVIAATGTGT IPANYSSLNI SLRSSGNISR HNYLTQNLSH GVGLFSSENS SMGLNIFPSG  180
NVNVNLNAML QAKQELYCDR EGNNIGRKRR SENQDLLPVL QNYHMGNNYM LQTSNSGSIP  240
ASYQGQIPAT TLYMMTNNSS HDPNSMWTFP STIGNSNIRG GSLTNSGLLN FMNSHPSVLG  300
QHSGGGDDGG GTVVEGQLGM LTAMNSLRQL GHASGSSNQH NGADDHGNNG HHCHHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492905e-85AC149290.1 Solanum demissum chromosome 5 clone PGEC093P17, complete sequence.
GenBankAC1493015e-85AC149301.1 Solanum demissum chromosome 5 clone PGEC517A09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804589.10.0PREDICTED: transcription factor TCP15-like
TrEMBLA0A1U7YZN50.0A0A1U7YZN5_NICSY; transcription factor TCP15-like
STRINGXP_009804589.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139471214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-50TCP family protein