PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804704.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 160aa    MW: 18365 Da    PI: 8.9473
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804704.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.15.7e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+k  rqvtfskRr+g+lKKA+ELS+LCda+vavi+fs++g+ly++ss
  XP_009804704.1  9 KRIEDKHSRQVTFSKRRKGLLKKAKELSILCDADVAVIVFSNRGRLYDFSS 59
                    79***********************************************96 PP
2K-box34.58.5e-13871541683
           K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                     + + ++a      e Lq+  R+l    ++ Ls+ +L qLe+qL+++l + Rs K++l++e+i+ l +k
  XP_009804704.1  87 TEHSKYASFMTVRELLQTVERQLEEPVVDYLSVTDLVQLENQLQTALMQARSSKTHLMIESIKSLGEK 154
                     334456667778899***********************************************998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.553161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-31279IPR002100Transcription factor, MADS-box
CDDcd002651.83E-36273No hitNo description
PRINTSPR004044.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.11685160IPR002487Transcription factor, K-box
PfamPF014862.1E-892154IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGRKKVEIKR IEDKHSRQVT FSKRRKGLLK KAKELSILCD ADVAVIVFSN RGRLYDFSST  60
NSLTEIVQRY HSHVEAEKES SAEVLDTEHS KYASFMTVRE LLQTVERQLE EPVVDYLSVT  120
DLVQLENQLQ TALMQARSSK THLMIESIKS LGEKVGLGYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-21187187Myocyte-specific enhancer factor 2B
1tqe_Q2e-21187187Myocyte-specific enhancer factor 2B
1tqe_R2e-21187187Myocyte-specific enhancer factor 2B
1tqe_S2e-21187187Myocyte-specific enhancer factor 2B
6c9l_A2e-21187187Myocyte-specific enhancer factor 2B
6c9l_B2e-21187187Myocyte-specific enhancer factor 2B
6c9l_C2e-21187187Myocyte-specific enhancer factor 2B
6c9l_D2e-21187187Myocyte-specific enhancer factor 2B
6c9l_E2e-21187187Myocyte-specific enhancer factor 2B
6c9l_F2e-21187187Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804704.11e-113PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A1U7Z0041e-112A0A1U7Z004_NICSY; agamous-like MADS-box protein AGL27
STRINGXP_009804704.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.17e-45AGAMOUS-like 31