PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804801.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 237aa    MW: 27222.8 Da    PI: 6.9532
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.83.3e-11134157124
                     ---SS-EEEEEEE--TT-SS-EEE CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsY 24 
                     ldDgy+WrKYG+K+vk++++pr Y
  XP_009804801.1 134 LDDGYKWRKYGKKKVKSNTNPREY 157
                     59*********************9 PP
2WRKY53.35.4e-171672091759
                     T-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  17 gsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     g++  r+YY+C+s gC+vkkkver+  d +++++tYeg+Hnhe
  XP_009804801.1 167 GNQLNRNYYKCSSGGCKVKKKVERDGIDSSYLITTYEGKHNHE 209
                     79999*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-27120211IPR003657WRKY domain
SuperFamilySSF1182907.72E-9127157IPR003657WRKY domain
PROSITE profilePS5081124.845129211IPR003657WRKY domain
SMARTSM007744.9E-27134210IPR003657WRKY domain
PfamPF031061.3E-6135157IPR003657WRKY domain
SuperFamilySSF1182902.48E-13167211IPR003657WRKY domain
PfamPF031062.5E-12167209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MFGSSTFQET SNISHQTINP NFAFSPLINM NQDHGHNMYQ DFDTSFIDQL INDGEEYSSS  60
NNSFNSTSLY SQNPFMQQEI STSTYSGNSS ASSFDATPTN IHMNENSSNK GIEKEKKAEK  120
HAIAFRTKTE LETLDDGYKW RKYGKKKVKS NTNPREYNIR NALTKWGNQL NRNYYKCSSG  180
GCKVKKKVER DGIDSSYLIT TYEGKHNHES PFIIYCDEKP TVSFHNDQWT LQADSLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-19126211977Probable WRKY transcription factor 4
2lex_A3e-19126211977Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4604750.0DQ460475.1 Nicotiana tabacum cultivar Samsun NN putative WRKY transcription factor (WRKY12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804801.11e-178PREDICTED: probable WRKY transcription factor 51 isoform X1
RefseqXP_016487858.11e-178PREDICTED: probable WRKY transcription factor 51 isoform X1
TrEMBLA0A1S4BG641e-177A0A1S4BG64_TOBAC; probable WRKY transcription factor 51 isoform X1
TrEMBLA0A1U7YS781e-177A0A1U7YS78_NICSY; probable WRKY transcription factor 51 isoform X1
STRINGXP_009804801.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134941217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.19e-10WRKY DNA-binding protein 51