PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010086530.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Protein Properties

Length: 127aa MW: 14791.8 Da PI: 6.7856

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010086530.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.6	1.4e-10	12	109	3	97
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.s 88 k+l+p dv + + +p + + + + + ++ ++++d+ g + ++ + + +sg ++ ++GW +Fvk+ +L+eg++v F + XP_010086530.1 12 KTLSPDDVKDK--FHVPSNWVGTLfpnlE--QDSELPIQVRDQAGSERQFVM--KTRSGDylkaVFQRRGWHKFVKDFDLREGETVYFWKEAVgG 100 55655555544..6889999877788544..44555699****9999999..77776645546666******************8444334 PP EE..EEEEE CS B3 89 efelvvkvf 97 + ++v+v+ XP_010086530.1 101 RDIMRVQVR 109 444566665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.22E-13	7	100	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.9E-15	7	104	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.73E-11	8	110	No hit	No description
Pfam	PF02362	1.5E-7	18	109	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MADCARPPCY GKTLSPDDVK DKFHVPSNWV GTLFPNLEQD SELPIQVRDQ AGSERQFVMK 60 TRSGDYLKAV FQRRGWHKFV KDFDLREGET VYFWKEAVGG RDIMRVQVRD EPQFVQLFGV 120 HLVMPNE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010086530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W9SNH0	3e-90	W9SNH0_9ROSA; Uncharacterized protein
STRING	XP_010086530.1	5e-91	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17870	2	4

Link Out ? help Back to Top
Entrez Gene	21383944