PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010086730.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 528aa    MW: 58545.9 Da    PI: 4.794
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010086730.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS192.33.1e-59742853211
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL ecA+a+s++d +++++lL+ l+el+sp+gd  q+la+yf++AL  + ++s+ ++y++l++ ++++++ +++ +    f+ev+P+ +f+h++
  XP_010086730.1  74 RLLKECARAISEKDSTKIHHLLWMLNELSSPYGDCDQKLASYFLQALFCKATGSGLRCYRTLSSVAEKSRSFDSARKLILKFQEVTPWTTFGHVA 168
                     7899**********************************************************9999986555555555555************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      N aIlea+ege ++HiiD++ + ++QWp+Ll+aLa+R++++p+lR+T+v+  +s        ++e+g+r++kfA+ +gvpfe n++   + + l
  XP_010086730.1 169 SNGAILEALEGEPKLHIIDISNTLCTQWPTLLEALATRNDETPRLRLTVVDVISSAvagGGAVMKEIGQRMEKFARLMGVPFELNMISGPNSTRL 263
                     **************************************************99888788899*************************8888***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlh 211
                     + e+Lrv+ +Ea+aVn+v +l+
  XP_010086730.1 264 TREALRVRDDEAVAVNCVGALM 285
                     ******************8875 PP
2GRAS79.75e-25284420171303
            GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...........sFl 254
                      +gvpfe n++   + + l+ e+Lrv+ +Ea+aVn+v +l r       le+ r++ +++++sl Pkvv++ve+ea++ ++           +F+
  XP_010086730.1 284 LMGVPFELNMISGPNSTRLTREALRVRDDEAVAVNCVGALRRAG-----LEE-REAAVRVFRSLDPKVVTIVEEEANMVAAavasgnnddenDFV 372
                     589*******8888****************************98.....666.889*******************99955558899999999*** PP

            GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                     erf e+l++y+  f++le++++++s+e+ ++Ere  +r iv ++ac g 
  XP_010086730.1 373 ERFEECLRFYTLYFEMLEESFSPTSNEKLMLERE-CSRGIVRALACGGG 420
                     **********************************.899********886 PP
3GRAS36.66.2e-12443527300374
            GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve....ee......sgslvlgWkdrpLvsvSaWr 374
                         + +er+e+  +W+er+++a F+pv +s+++++++k+ll++++ ++g  +     ++      ++ ++l+Wk++p+v++SaW+
  XP_010086730.1 443 SGDGWDFERREKGTQWSERMKKA-FSPVLYSDDVVDDVKALLKRYPsGWGLVLPqakqQQqeqqqnDHGIYLTWKEEPVVWASAWK 527
                     5555669**************98.**********************9999766544440044555588889**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.1746496IPR005202Transcription factor GRAS
PfamPF035141.1E-5674285IPR005202Transcription factor GRAS
PfamPF035142.2E-9443527IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MDITLFGTTP KEAQFLINSN SNNDYATTTT IGNMQTTTTI NNHLNSHTST SGISSDSVAA  60
AAATEPWGGQ WASRLLKECA RAISEKDSTK IHHLLWMLNE LSSPYGDCDQ KLASYFLQAL  120
FCKATGSGLR CYRTLSSVAE KSRSFDSARK LILKFQEVTP WTTFGHVASN GAILEALEGE  180
PKLHIIDISN TLCTQWPTLL EALATRNDET PRLRLTVVDV ISSAVAGGGA VMKEIGQRME  240
KFARLMGVPF ELNMISGPNS TRLTREALRV RDDEAVAVNC VGALMGVPFE LNMISGPNST  300
RLTREALRVR DDEAVAVNCV GALRRAGLEE REAAVRVFRS LDPKVVTIVE EEANMVAAAV  360
ASGNNDDEND FVERFEECLR FYTLYFEMLE ESFSPTSNEK LMLERECSRG IVRALACGGG  420
GGDYDDENKE QGEGEETNYA VKSGDGWDFE RREKGTQWSE RMKKAFSPVL YSDDVVDDVK  480
ALLKRYPSGW GLVLPQAKQQ QQEQQQNDHG IYLTWKEEPV VWASAWKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-1286952884474Protein SHORT-ROOT
5b3h_B1e-1296952830420Protein SHORT-ROOT
5b3h_E1e-1296952830420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010086730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026620.10.0protein SHORT-ROOT
TrEMBLW9QBM00.0W9QBM0_9ROSA; Uncharacterized protein
STRINGXP_010086730.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129734106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-118GRAS family protein