PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010086806.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 238aa    MW: 27426.7 Da    PI: 5.4515
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010086806.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.1e-121964348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rWT+ Ed+ l ++++  G ++W+  ++  g+++++ +c++rw++yl
   XP_010086806.1 19 RWTAMEDKTLTEYIRINGERQWNCLPQNAGLKKSGRSCRLRWLNYL 64
                     9*****************************99************97 PP
2Myb_DNA-binding45.22.2e-1470113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++ E++ +++++k lG++ W+ Ia  ++ gRt++++k++w++
   XP_010086806.1  70 RGNISQKEEDTIIRLHKNLGNR-WSVIAGLLP-GRTDNEIKNYWNT 113
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.8621264IPR017877Myb-like domain
SMARTSM007177.5E-81666IPR001005SANT/Myb domain
SuperFamilySSF466892.7E-2418111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-181971IPR009057Homeodomain-like
PfamPF002494.1E-101964IPR001005SANT/Myb domain
CDDcd001674.50E-61964No hitNo description
PROSITE profilePS5129421.79265119IPR017930Myb domain
SMARTSM007171.4E-1269117IPR001005SANT/Myb domain
PfamPF002491.3E-1270113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2372119IPR009057Homeodomain-like
CDDcd001672.87E-874113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGERRPRISG GSDEGSSRRW TAMEDKTLTE YIRINGERQW NCLPQNAGLK KSGRSCRLRW  60
LNYLKPGIKR GNISQKEEDT IIRLHKNLGN RWSVIAGLLP GRTDNEIKNY WNTKISKKIK  120
EDDCKADSTT SSDPKPSIGH ESLEVPNLTT KQQLGLCEVP QTSLNESDET SIPSPEEARM  180
ELEDDPVAAQ PRDIYGVVHE HFETILSPVR ICEDKWQLMH DDVWMDFEIW NTFPDQQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-232011910108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010086806.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086806.11e-178transcription factor WER
TrEMBLW9QL731e-176W9QL73_9ROSA; Transcription factor
STRINGXP_010086806.11e-177(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.12e-45myb domain protein 66