PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010086808.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 224aa    MW: 26071.1 Da    PI: 6.7246
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010086808.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.2e-151763248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +WTt Ed++l +++k +G g+W+  + + g++R +k+c++rw++yl
   XP_010086808.1 17 RAWTTMEDKILTEYIKIHGEGQWNYLPLKAGLKRNGKSCRLRWLNYL 63
                     68*******************************************97 PP
2Myb_DNA-binding537.7e-1769112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE++l++++++qlG++ W+ Ia  ++ gRt++++k++w++
   XP_010086808.1  69 RGNISQEEEDLIIRLHQQLGNR-WSVIAGLLP-GRTDNEVKNYWYT 112
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.5E-101565IPR001005SANT/Myb domain
PfamPF002491.4E-111663IPR001005SANT/Myb domain
SuperFamilySSF466895.87E-2816110IPR009057Homeodomain-like
PROSITE profilePS500909.4421663IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-201870IPR009057Homeodomain-like
CDDcd001672.46E-71863No hitNo description
PROSITE profilePS5129423.17864118IPR017930Myb domain
SMARTSM007173.3E-1568116IPR001005SANT/Myb domain
PfamPF002491.6E-1469112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2471119IPR009057Homeodomain-like
CDDcd001671.54E-1073112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRRRSRCSE EALNAKRAWT TMEDKILTEY IKIHGEGQWN YLPLKAGLKR NGKSCRLRWL  60
NYLKPGIKRG NISQEEEDLI IRLHQQLGNR WSVIAGLLPG RTDNEVKNYW YTKISKKIKH  120
DHGHDHGDST ASSDPKPSND GDYESLQGQN LTKKQQGLSE VPQPSQNEYD ETTSIPWPAQ  180
PWDIGVHEHF ETIFSPVRIL EGNYQLMYDD AWMDFDFEIW NNLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23151186108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010086808.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086808.11e-168transcription factor WER
SwissprotQ9SZP12e-47MYB4_ARATH; Transcription repressor MYB4
TrEMBLW9QBS41e-167W9QBS4_9ROSA; Transcription repressor
STRINGXP_010086808.11e-167(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-47MYB family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]