PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010086870.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 252aa MW: 27518.2 Da PI: 7.968

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010086870.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.6	5.8e-40	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vhk++Gasnv k+l++l +re+a+ sl+yeAear+rdPv G+vg+i+ l+++l+q +ae++ XP_010086870.1 9 PCAACKFLRRKCTQECVFAPYFPPDQPQKFASVHKVYGASNVAKILNELTVVHREEAAISLAYEAEARLRDPVFGCVGFITILHNRLKQIQAEVH 103 7********************************************************************************************** PP DUF260 96 llkee 100 + k+e XP_010086870.1 104 ASKKE 108 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.359	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-39	9	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MASSSSHSPC AACKFLRRKC TQECVFAPYF PPDQPQKFAS VHKVYGASNV AKILNELTVV 60 HREEAAISLA YEAEARLRDP VFGCVGFITI LHNRLKQIQA EVHASKKELA TYIGPQAMMV 120 MMPPPPSYGM APPPPPTLGI QPTNNASAQL LIREPMNAQQ YHHHQQQMFN SGFDHVPPVS 180 GGFSNQMNGG GRGSPSGGVV SPSLGLGGFD NVPNYHIQSQ QQQVHPPPLD YQLQTQLIIS 240 SQQKSEGDHQ QN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	8	112	10	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	8	112	10	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010086870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010086870.1	0.0	LOB domain-containing protein 6
Swissprot	Q9FKZ3	1e-62	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	W9QIY4	0.0	W9QIY4_9ROSA; Uncharacterized protein
STRING	XP_010086870.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-58	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Entrez Gene	21388758

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]