PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010086900.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 260aa    MW: 28612.4 Da    PI: 5.8823
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010086900.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-101452148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++ +++G+g         g++R++k+c++rw++yl
   XP_010086900.1 14 RGPWSPEEDATLKNYLEKHGTG---------GLNRCGKSCRLRWLNYL 52
                     89********************.........999************97 PP
2Myb_DNA-binding35.91.7e-1159101246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
   XP_010086900.1  59 GGFTEEEDSVIWTLYNSIGSR-WSIIASQLP-GRTDNDVKNYWNT 101
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-17555IPR009057Homeodomain-like
PROSITE profilePS5129410.887952IPR017930Myb domain
SuperFamilySSF466892.2E-251299IPR009057Homeodomain-like
SMARTSM007171.5E-61354IPR001005SANT/Myb domain
PfamPF002491.8E-91452IPR001005SANT/Myb domain
CDDcd001679.61E-916103No hitNo description
PROSITE profilePS5129420.04153107IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2256107IPR009057Homeodomain-like
SMARTSM007175.4E-1057105IPR001005SANT/Myb domain
PfamPF002495.4E-1059101IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPE EDATLKNYLE KHGTGGLNRC GKSCRLRWLN YLRPDIKHGG  60
FTEEEDSVIW TLYNSIGSRW SIIASQLPGR TDNDVKNYWN TKLKKKLSMA GRTSFNHTTA  120
NNNNNETTNN NMTSDDHLNS GRLSCSVSKI GSSDHHGINS ACFDANSSTL LPYFDLQEPK  180
LDPIDQFCYS NPVEVSDFSA NGNTSSSNVS SLSTSSPLGF DNNLASWAGN IDGGLNHEDG  240
ILMELGFDSY NDSLLSGFGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141077108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010086900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295765e-63KP229576.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB20) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017297.11e-163transcription factor MYB36
TrEMBLW9QIZ70.0W9QIZ7_9ROSA; Transcription factor RAX1
STRINGXP_010086900.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-61myb domain protein 36