PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010086912.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family WRKY
Protein Properties Length: 257aa    MW: 29165.6 Da    PI: 8.1741
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010086912.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-32180238159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  XP_010086912.1 180 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 238
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-33165238IPR003657WRKY domain
SuperFamilySSF1182901.57E-28172239IPR003657WRKY domain
PROSITE profilePS5081129.344175240IPR003657WRKY domain
SMARTSM007749.8E-37180239IPR003657WRKY domain
PfamPF031064.2E-25181237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MASTSQAMIN NQGLFEDDQE APVTQMGFFS FPSNMAHPQL SPLGCLKNFS IPCSTNNNIS  60
TNINLSETLI SSLSTTSTTT SSPSKHMRED HFTASDHFGG PQLLSLQRST ANLWSWGEVN  120
ECMGNKLRSG GGFNGGEDHD DHDHHHHLGV SAMKMKKIKG RRKVREPRFC FKTMSEVDVL  180
DDGYKWRKYG QKVVKNTQHP RSYYRCTQDN CRVKKRVERL AEDPRMVITT YEGRHVHSPS  240
HDLEDSQAPS LLNNFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26172237974Probable WRKY transcription factor 4
2lex_A3e-26172237974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010086912.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2297594e-88KP229759.1 UNVERIFIED: Boehmeria nivea WRKY transcription factor-like (WRKY30) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086912.10.0probable WRKY transcription factor 13
SwissprotQ9SVB79e-67WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLW9QLH30.0W9QLH3_9ROSA; Putative WRKY transcription factor 13
STRINGXP_010086912.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-61WRKY DNA-binding protein 13