PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010086970.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 155aa    MW: 17762.5 Da    PI: 9.5295
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010086970.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELS+LC+aeva++ifs++gkly y+s
  XP_010086970.1  9 KRIENPTSRQVTFSKRRNGLLKKAFELSILCEAEVAIVIFSPSGKLYQYAS 59
                    79***********************************************86 PP
2K-box64.44.1e-22861481375
           K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                     + e +++e++ Lk+ +enL+ ++Rhl GedL  L +keL+qLe+qL++++++iR kK +ll +
  XP_010086970.1  86 TIEFWKTEIDELKRSTENLEVNLRHLSGEDLAMLGMKELKQLERQLKTGVERIRCKKVKLLEN 148
                     5799*******************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.987161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-39160IPR002100Transcription factor, MADS-box
CDDcd002653.17E-40274No hitNo description
SuperFamilySSF554556.8E-32287IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.22787155IPR002487Transcription factor, K-box
PfamPF014862.5E-1787147IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSILCE AEVAIVIFSP SGKLYQYASH  60
DMERSIARYR SEIGLPGSAD NPTCRTIEFW KTEIDELKRS TENLEVNLRH LSGEDLAMLG  120
MKELKQLERQ LKTGVERIRC KKVKLLENPD DANPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-23169169MEF2 CHIMERA
6byy_B4e-23169169MEF2 CHIMERA
6byy_C4e-23169169MEF2 CHIMERA
6byy_D4e-23169169MEF2 CHIMERA
6bz1_A4e-23169169MEF2 CHIMERA
6bz1_B4e-23169169MEF2 CHIMERA
6bz1_C4e-23169169MEF2 CHIMERA
6bz1_D4e-23169169MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010086970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017888.11e-106agamous-like MADS-box protein AGL1
TrEMBLW9QX821e-110W9QX82_9ROSA; Agamous-like MADS-box protein AGL16
STRINGXP_010086970.11e-111(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-45AGAMOUS-like 16