PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010086977.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family SBP
Protein Properties Length: 399aa    MW: 43877.6 Da    PI: 7.3495
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010086977.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.24.1e-4295171278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC+adls++++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  XP_010086977.1  95 CLVDGCNADLSNCRDYHRRHKVCELHSKTPQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 171
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-3488156IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.23192169IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-3993174IPR004333Transcription factor, SBP-box
PfamPF031103.6E-3195168IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDWNSKAPTS WDFTELEQET FSNLDTVNGS NSFGDQKAIR EDFSVDLKLG QTGNSGNEMV  60
DTWREPGAVP KPVSSPSGSS KRSRGSYNGS QAVSCLVDGC NADLSNCRDY HRRHKVCELH  120
SKTPQVTIGG HKQRFCQQCS RFHSLEEFDE GKRSCRKRLD GHNRRRRKPQ PEPFSRYGNL  180
LSNYTGTQLL PFSSSLIYPS TTVVNPSWPG GVVVKTEADS GLHNHHPQLP FLDKQNMFMG  240
SPSPTTNTTY KGCSNKPFPL LQDHSPTINS SHTAPEVSAC HNHPLLRTFP LCESSSESKS  300
KAFFDVQHSD CALYLLSSSQ AQTSEISLGH NNSQLGSMPM VHHPALYVHG GLEPMSSVLM  360
ANGSSGNAES VHCPNGMFHM GSVGNEAPHP HETLPSHWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2885168184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151168KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010086977.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086977.10.0squamosa promoter-binding-like protein 13A
RefseqXP_024017871.10.0squamosa promoter-binding-like protein 13A
TrEMBLW9QLM60.0W9QLM6_9ROSA; Squamosa promoter-binding-like protein 13
STRINGXP_010086977.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-69SBP family protein