PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010087059.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 200aa MW: 21647.8 Da PI: 9.4553

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010087059.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	78.4	1.2e-24	53	119	34	100
DUF260 34 hklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+++++e XP_010087059.1 53 RRVFGASNVSKMLMEVPEGQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRTE 119 69************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.517	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-23	54	117	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MSRERERFDE IGKKIKRESD AASTQNMGRR HMLGPPGTLN TITPCAACKL LRRRVFGASN 60 VSKMLMEVPE GQRADAANSL VYEANVRLRD PVYGCMGAIS ALQQQVQSLQ AELNAVRTEI 120 LKYKYREANV LPSSHMALLS SSGVAVSIAA PPPAPPPPPP LPPTVQSLPL TSSSSSMYTQ 180 PITTVADFNT ISSENVSYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-29	36	134	3	125	LOB family transfactor Ramosa2.1
5ly0_B	3e-29	36	134	3	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010087059.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024018199.1	1e-121	LOW QUALITY PROTEIN: LOB domain-containing protein 15
Swissprot	Q8L5T5	2e-64	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	W9QCG5	1e-144	W9QCG5_9ROSA; Uncharacterized protein
STRING	XP_010087059.1	1e-145	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	5e-62	LOB domain-containing protein 15

Link Out ? help Back to Top
Entrez Gene	21395527

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]