PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087102.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 459aa    MW: 50509.6 Da    PI: 8.7976
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087102.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-057698123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_010087102.1 76 FVCEICNKGFQRDQNLQLHRRGH 98
                    89*******************88 PP
2zf-C2H212.30.00051152174123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_010087102.1 152 WKCEKCSKIYAVQSDWKAHSKTC 174
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-57598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.08E-67598No hitNo description
PROSITE profilePS5015710.9497698IPR007087Zinc finger, C2H2
SMARTSM003550.0177698IPR015880Zinc finger, C2H2-like
PfamPF121717.2E-57698IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM00355260117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.08E-6147172No hitNo description
SMARTSM00355170152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MSNSTSLSTD EASVSSGTRV QDFGGLFNPL ISSFNSPHDH QEPQKLKKKR NLPGNPDPDA  60
EVIALSPKTL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSSK EIKKRAYVCP  120
EPTCVHHHPS RALGDLTGIK KHYCRKHGEK KWKCEKCSKI YAVQSDWKAH SKTCGTREYR  180
CDCGTLFSRK DSFITHRAFC DALAEESARL SANQLATTLQ PLFPNFPNIS HHHHHFLNRP  240
PFHIHTQTLN NNVNPWDPPH NNPNPSHHQL HHQIIIKPEE SDHRHFQIPP PPSAALILPP  300
EQQQQQPQPL QKSISMNIST TSLHVAPHSS ATSAHLSATA LLQKAASVGP QPAAGGAPGH  360
MAGLADVGGG EFLATWQKSD RFTRDFLGLT AVDHGNGRSG GDGAGDRNGA VDISVSVKDM  420
LTYAGGVEFA AYHEREGSLL KPQGFGFAAA SASETWGDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36148212367Zinc finger protein JACKDAW
5b3h_F3e-36148212367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087102.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087102.20.0protein indeterminate-domain 12
SwissprotO227591e-126IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLW9QJG20.0W9QJG2_9ROSA; Zinc finger protein MAGPIE
STRINGXP_010087102.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-116indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]