PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087182.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 180aa    MW: 20793.8 Da    PI: 9.6034
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087182.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.33.7e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+ nr+vt+skR++gi+KKA+E+S+LCda+v++ii++++gk+ +++s
  XP_010087182.1  9 KRIENSNNRSVTYSKRKKGIIKKAQEISILCDAKVSLIIYGPNGKIVDFCS 59
                    79*********************************************9986 PP
2K-box584.1e-2072154183
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                     yq+ sgk+l++ k+e+l++e++  kke+en+   +Rh++G++++sL+++eL+ Le+ L ++l+++R+ + +l +  ++++++ 
  XP_010087182.1  72 YQRLSGKRLWDLKHENLNTEIEMTKKENENMDIHLRHMKGQEIQSLNHRELMALEDTLYNGLQNVRAAQARLGHVGVDRQRND 154
                     78999**************************************************************9998877666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.1161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-32296IPR002100Transcription factor, MADS-box
CDDcd002652.72E-33281No hitNo description
PRINTSPR004045.5E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.0E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-253859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-1284149IPR002487Transcription factor, K-box
PROSITE profilePS512979.48685177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGRGKIEIKR IENSNNRSVT YSKRKKGIIK KAQEISILCD AKVSLIIYGP NGKIVDFCSP  60
ETTSLSFIAE EYQRLSGKRL WDLKHENLNT EIEMTKKENE NMDIHLRHMK GQEIQSLNHR  120
ELMALEDTLY NGLQNVRAAQ ARLGHVGVDR QRNDSIISEW TAKKLLNEYM VRHGKETLDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-15172172MEF2 CHIMERA
6byy_B8e-15172172MEF2 CHIMERA
6byy_C8e-15172172MEF2 CHIMERA
6byy_D8e-15172172MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087182.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019114.14e-99floral homeotic protein PMADS 2
SwissprotQ074743e-61MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLW9QXV01e-130W9QXV0_9ROSA; Floral homeotic protein PMADS 2
STRINGXP_010087182.11e-131(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-60MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]