PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010087187.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C3H

Protein Properties

Length: 2046aa MW: 226158 Da PI: 7.9592

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010087187.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	1919	1940	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tGtC+ G++Ck +H++ XP_010087187.1 1919 CPTFEATGTCPQGSKCKLHHPK 1940 *****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	6.211	1864	1890	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.563	1891	1912	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.13	1891	1917	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.76	1913	1941	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.25	1918	1940	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043484	Biological Process	regulation of RNA splicing
GO:0060149	Biological Process	negative regulation of posttranscriptional gene silencing
GO:0016607	Cellular Component	nuclear speck
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2046 aa Download sequence Send to blast
MDLPNFLHHH NQQNHHSHHN LNQPRYVSVP NSSRPHYPDD PNSQNPRYLH HHHHHHVLQP 60 PPPPPPPPQT PRFQPPPLPK PSPYHPAPTV HSHTSSPGQS QFAFANPSHD RSFDGDHPRS 120 SYPLREFAPS SKVSHRLPVV EDDRPRHRVP EFDPESRQEF WEQSRVLAEN LPERTHLPLD 180 FASGSQKFQF DHKAMSPYKT SNRVRHDSET SARFRVEYAD VYESKYREEV PLGREDENYG 240 RSGNFLSSQG TSFHDVGFVS NSSLSLRNLE SESENCHGNR NGSAHDKELF RSGRRDAGYE 300 NQRRVHDRKV PRDAHKSSFE RGGGEISNGD GAYFVSHKRG YYGSESGRYN NRGSRDGAHE 360 FNRTPRKQIQ KKSALLRLQK QNHRNTKSEQ SQYSGYLDNS NSSYFRRRDH HAYVSNGVDE 420 EEEKEGSPVE LDVSFKSNSL VAKAISTPTG CSNVNDADST LRNMKGGKDS VADSDCSNAK 480 LTKLTDNTIN VDSSMQLANS VSSPDKKMTQ SDGKITSDIK AMCNASTQAC SSVTNHSFEK 540 KEVQRSPKSA DFDKVGTKVG PRKPSLKVVK KKKVVKKKVK KVVRSNPQQK KKHDETVTTD 600 AHIPIPSEAF GIDKVAVSLS HPCPNETNML HVGRNVGSSP VAIESEEHRI DETGTKCENP 660 VEKNGNKLNT CLGFSSLEEI KIAKNPENTE YFGQSSHAIS NNNENLVKSL NESTFLDIVN 720 VEDVKQSRQS GDSLFELDKE NSSPITLPVR DKADSSLLNS GNIKMHDNLM NICCSADGTD 780 TTLDIVDGTK LSIEENPVRE EISKSTLSAR SSVTICGLPS SGESTMDAHT SHHDSDRRTS 840 LGYNNESNYE EITISRSGIV DCIIEQPPTD SSSGLPENSA IGSSQNTKIS VGDDEEDTPV 900 TRKGRTIRSQ LDFSRTKNVD MDPVNVSNPA TAVDTKLSLP FEDTSSEVVA VSFMGSLDDA 960 LQPVKNQACG SSDGFPEANL SARDGVNDGF HVTPFKSRKR RKVSASHQAM SSLTTAQTDE 1020 QPAADKSSFC AEAPLTSNEV LAQQNMELDT SSKDDVCAAT DLMNSENVIT VSDGNKLSEG 1080 FSNAMGVGSF VNEEPRKDDG VVMAVNDHQF EVFNVQSRSE EEVGVPASKE EVIGQDETPQ 1140 CTISSGIQPP DIGKSFSFTD MGSDNLLVKD DFPNLPNYLS SPNDCSGATS TDEAMDFVPD 1200 SPTMTSSPQT SLDVPDVNMS DVTSVSQISN QICREDEKLV QKSLDDKGSE VSAQKSFSQC 1260 TKSNLTSDSA TECDQAIGGK TAPLSLQDCR STSRGVNIES VESNEQKNQL DQAVSRTFPG 1320 RSSFRLTTFK KRANSTHANP RTWHRNVNSS ACALPGSKTF SKNVPSQKQL PERDEKVQST 1380 SYVRKGNSLV RKPSPTAALS QGPPSFSPVY RLNSAGSDEL KRSIESDNRV SLGNTHDLSR 1440 VGETKASCNN PGPLPIQSGS KLPNSVAISP GDCTASPSAG LLSNDRCETN SDPISSTENN 1500 ETPNLVEDSL TSEAFENQNG QLNSLDNQTE LSNANLASSN MKQIVYVKRK SNQLVATSNS 1560 TSADKIQTSS SDGYYKRKKN QLIRTSLESH TKQPVMPDDN FNLGVQMTLG VIPNRSKRRG 1620 HKVVPKTFKR STNSLVWTLC STESTKVNSG SLYHQKVFPH LFPWKRTTYW RSFMLNSNLI 1680 YKSSSLAISK KLLLSRKRDT LYTRSLNGFS LRKSKVLSVG GASLKWSKSL ENRSKKVNEE 1740 ATLAVVAVDK KKREQKEATC ISSGSKSRNH SSRERIFRIG TSRYKMDPSR RTLQRISDDE 1800 SSPAASAYPA KDLKTSFVPR RLVIGNDEYV RIGNGNQLIR NPKKRTRILA SEKVRWSLHT 1860 ARLRGNAEFL IDFLAGLCTN QSCPYRHVNV NPKASTCEGF LRGYCADGDE CRKKHSYVCP 1920 TFEATGTCPQ GSKCKLHHPK NRLHGKKRKR LRKLKNGKGR YFGSPDINVS ESKTTVSEKH 1980 FAQDYNDLSL EGKCGDFIAI DVSDDDTGEC NDSRNSQITF CDGDNSDLES EDLDELIKPL 2040 RIMVQV

Sequence ? help Back to Top

Protein Sequence Length: 2046 aa Download sequence Send to blast

MDLPNFLHHH NQQNHHSHHN LNQPRYVSVP NSSRPHYPDD PNSQNPRYLH HHHHHHVLQP  60
PPPPPPPPQT PRFQPPPLPK PSPYHPAPTV HSHTSSPGQS QFAFANPSHD RSFDGDHPRS  120
SYPLREFAPS SKVSHRLPVV EDDRPRHRVP EFDPESRQEF WEQSRVLAEN LPERTHLPLD  180
FASGSQKFQF DHKAMSPYKT SNRVRHDSET SARFRVEYAD VYESKYREEV PLGREDENYG  240
RSGNFLSSQG TSFHDVGFVS NSSLSLRNLE SESENCHGNR NGSAHDKELF RSGRRDAGYE  300
NQRRVHDRKV PRDAHKSSFE RGGGEISNGD GAYFVSHKRG YYGSESGRYN NRGSRDGAHE  360
FNRTPRKQIQ KKSALLRLQK QNHRNTKSEQ SQYSGYLDNS NSSYFRRRDH HAYVSNGVDE  420
EEEKEGSPVE LDVSFKSNSL VAKAISTPTG CSNVNDADST LRNMKGGKDS VADSDCSNAK  480
LTKLTDNTIN VDSSMQLANS VSSPDKKMTQ SDGKITSDIK AMCNASTQAC SSVTNHSFEK  540
KEVQRSPKSA DFDKVGTKVG PRKPSLKVVK KKKVVKKKVK KVVRSNPQQK KKHDETVTTD  600
AHIPIPSEAF GIDKVAVSLS HPCPNETNML HVGRNVGSSP VAIESEEHRI DETGTKCENP  660
VEKNGNKLNT CLGFSSLEEI KIAKNPENTE YFGQSSHAIS NNNENLVKSL NESTFLDIVN  720
VEDVKQSRQS GDSLFELDKE NSSPITLPVR DKADSSLLNS GNIKMHDNLM NICCSADGTD  780
TTLDIVDGTK LSIEENPVRE EISKSTLSAR SSVTICGLPS SGESTMDAHT SHHDSDRRTS  840
LGYNNESNYE EITISRSGIV DCIIEQPPTD SSSGLPENSA IGSSQNTKIS VGDDEEDTPV  900
TRKGRTIRSQ LDFSRTKNVD MDPVNVSNPA TAVDTKLSLP FEDTSSEVVA VSFMGSLDDA  960
LQPVKNQACG SSDGFPEANL SARDGVNDGF HVTPFKSRKR RKVSASHQAM SSLTTAQTDE  1020
QPAADKSSFC AEAPLTSNEV LAQQNMELDT SSKDDVCAAT DLMNSENVIT VSDGNKLSEG  1080
FSNAMGVGSF VNEEPRKDDG VVMAVNDHQF EVFNVQSRSE EEVGVPASKE EVIGQDETPQ  1140
CTISSGIQPP DIGKSFSFTD MGSDNLLVKD DFPNLPNYLS SPNDCSGATS TDEAMDFVPD  1200
SPTMTSSPQT SLDVPDVNMS DVTSVSQISN QICREDEKLV QKSLDDKGSE VSAQKSFSQC  1260
TKSNLTSDSA TECDQAIGGK TAPLSLQDCR STSRGVNIES VESNEQKNQL DQAVSRTFPG  1320
RSSFRLTTFK KRANSTHANP RTWHRNVNSS ACALPGSKTF SKNVPSQKQL PERDEKVQST  1380
SYVRKGNSLV RKPSPTAALS QGPPSFSPVY RLNSAGSDEL KRSIESDNRV SLGNTHDLSR  1440
VGETKASCNN PGPLPIQSGS KLPNSVAISP GDCTASPSAG LLSNDRCETN SDPISSTENN  1500
ETPNLVEDSL TSEAFENQNG QLNSLDNQTE LSNANLASSN MKQIVYVKRK SNQLVATSNS  1560
TSADKIQTSS SDGYYKRKKN QLIRTSLESH TKQPVMPDDN FNLGVQMTLG VIPNRSKRRG  1620
HKVVPKTFKR STNSLVWTLC STESTKVNSG SLYHQKVFPH LFPWKRTTYW RSFMLNSNLI  1680
YKSSSLAISK KLLLSRKRDT LYTRSLNGFS LRKSKVLSVG GASLKWSKSL ENRSKKVNEE  1740
ATLAVVAVDK KKREQKEATC ISSGSKSRNH SSRERIFRIG TSRYKMDPSR RTLQRISDDE  1800
SSPAASAYPA KDLKTSFVPR RLVIGNDEYV RIGNGNQLIR NPKKRTRILA SEKVRWSLHT  1860
ARLRGNAEFL IDFLAGLCTN QSCPYRHVNV NPKASTCEGF LRGYCADGDE CRKKHSYVCP  1920
TFEATGTCPQ GSKCKLHHPK NRLHGKKRKR LRKLKNGKGR YFGSPDINVS ESKTTVSEKH  1980
FAQDYNDLSL EGKCGDFIAI DVSDDDTGEC NDSRNSQITF CDGDNSDLES EDLDELIKPL  2040
RIMVQV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010087187.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019067.1	0.0	uncharacterized protein LOC21387350 isoform X1
TrEMBL	W9QXV5	0.0	W9QXV5_9ROSA; Zinc finger CCCH domain-containing protein 7
STRING	XP_010087187.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6103	10	10

Link Out ? help Back to Top
Entrez Gene	21387350