PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087387.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 304aa    MW: 31979.1 Da    PI: 9.5647
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087387.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-09107132227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ +     Ck+Gd+C+FaHg+
  XP_010087387.1 107 KTRLCNKYNTAEGCKFGDKCHFAHGE 132
                     8***********************96 PP
2zf-CCCH37.44.1e-12271295126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +fa+ G C +GdrC+FaHg
  XP_010087387.1 271 FKTKLCENFAK-GSCTFGDRCHFAHG 295
                     69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-63863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.84562No hitNo description
Gene3DG3DSA:4.10.1000.101.4E-14103137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8104136IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535105133IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6107132IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.91E-15173247IPR004088K Homology domain, type 1
SMARTSM003223.7E-11176246IPR004087K Homology domain
PROSITE profilePS5008414.005177241IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.3E-16178246IPR004088K Homology domain, type 1
PfamPF000133.9E-11179243IPR004088K Homology domain, type 1
CDDcd001051.45E-14179242No hitNo description
Gene3DG3DSA:4.10.1000.106.1E-16269301IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7270296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-9270300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.197270297IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9271295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEFGGGRKRG RHDASLNGNG SFKKSRPELE SLSTGIGSKS KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGFKA VSQMIHIGGN QALPPAARNS AAPPPSFPDG SSPPAVKTRL CNKYNTAEGC  120
KFGDKCHFAH GEWELGKPTA PSYDDHQRGM GPVPGRIGGR MEPPPPAHGP AASFGLSSTA  180
KISVAASLAG AIIGKNGVNS KQICRVTGAK LSIRDHESDP NLRNIELEGT FDQIKQATAM  240
VQELILNVGS AAGNPMKGHH GMGHSGAANN FKTKLCENFA KGSCTFGDRC HFAHGTEELR  300
KSAI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087387.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087387.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-114C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLW9QK760.0W9QK76_9ROSA; Zinc finger CCCH domain-containing protein 14
STRINGXP_010087387.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-60C3H family protein