PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087389.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family RAV
Protein Properties Length: 382aa    MW: 44424 Da    PI: 9.0002
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087389.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.44.2e-0963109254
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     ++kGV    ++g W A+I+       + +r++lg+f +++ Aa a++ a+ kl+
  XP_010087389.1  63 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKAAAMAYDSAAIKLR 109
                     789996.566899****999......44**********99************98 PP
2B393.31.8e-29193291187
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+ltpsdv+k++rlv+pkkfa ++            g+   e+++l+++d++ r W+++++y+k+s+++v+t+GW++Fvk+n Lk++D+++F+
  XP_010087389.1 193 FQKELTPSDVGKLNRLVIPKKFAVKYfpyinedinhveGNGAVEDIELVFYDKNMRPWRFRYCYWKSSQSFVFTRGWNRFVKENSLKANDVITFY 287
                     99*****************************999888855556999************************************************9 PP

                     E-SS CS
              B3  84 ldgr 87 
                       ++
  XP_010087389.1 288 ACEH 291
                     6544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.29E-1262120No hitNo description
PROSITE profilePS5103217.30663118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-1663118IPR001471AP2/ERF domain
PfamPF008472.0E-463109IPR001471AP2/ERF domain
SMARTSM003801.6E-1863124IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1463119IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.102.5E-33191302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-29192291IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-27192287No hitNo description
PfamPF023624.1E-27193291IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281193302IPR003340B3 DNA binding domain
SMARTSM010191.4E-21193302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEDEYSSSMI SSAKTIINVP AMETSDSTNT NIYAIHARNN KRPRLEYHHE IDTNNIIASS  60
SAKFKGVVPQ QNGHWGAQIY ANHQRIWLGT FKSEKAAAMA YDSAAIKLRS GDSQRNFPWT  120
SLTIQEPDFQ SRHTIKMVLN MIKDSSYQSK FEEFVRTRSQ SKEVFIDKGN HDQHLNKKIK  180
GHGDAQFLTR QLFQKELTPS DVGKLNRLVI PKKFAVKYFP YINEDINHVE GNGAVEDIEL  240
VFYDKNMRPW RFRYCYWKSS QSFVFTRGWN RFVKENSLKA NDVITFYACE HYCRGTGILR  300
EVNGQSFCLI DVTHNGVNVE SKKCLSNDKE EANNYYHCEK HIMKVAWKQN FYQGSDQFKY  360
NEEDVSNNLE EKGIRLFGVH IK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2819228613100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087389.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087389.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P51e-103RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLW9QDA00.0W9QDA0_9ROSA; AP2/ERF and B3 domain-containing transcription factor
STRINGXP_010087389.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-105RAV family protein